SMTL ID : 3ef6.1

Crystal structure of Toluene 2,3-Dioxygenase Reductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: G.9, N.10, G.11, V.12, G.13, G.34, D.35, E.36, R.43, P.44, S.47, K.48, P.78, E.79, V.80, A.106, T.107, G.108, S.109, L.127, R.128, I.154, L.245, G.274, D.275, E.290, T.291, Y.292, S.319, W.320 Ligands: GOL.6 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:R.43, A:L.127, A:I.154 Hydrogen bonds: A:N.10, A:G.11, A:G.13, A:D.35, A:E.36, A:E.36, A:R.43, A:K.48, A:V.80, A:V.80, A:S.109, A:D.275, A:E.290, A:Y.292, A:W.320, A:W.320 Water bridges: A:V.12, A:V.12, A:G.14, A:D.35, A:E.36, A:R.43, A:E.79, A:G.108, A:S.109, A:R.110, A:R.110, A:R.110, A:V.276, A:M.293, A:A.295, A:S.319, A:S.319, A:T.321 Salt bridges: A:R.43, A:R.128

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: L.153, I.154, C.236, G.238 Ligands: GOL.6, GOL.7 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.153, A:I.154, A:C.236 Water bridges: A:G.152, A:G.152, A:G.152, A:G.155 SO4.3: 6 residues within 4Å: Chain A: A.350, D.368, A.369, P.370, R.371, D.372 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.368, A:R.371, A:D.372 Water bridges: A:D.372 Salt bridges: A:R.371

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: L.116, P.117, G.118, S.119, Q.120, L.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.116, A:G.118 GOL.5: 6 residues within 4Å: Chain A: L.153, R.287, L.289, E.290, T.291, P.317 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.287, A:L.289 Water bridges: A:S.319 GOL.6: 7 residues within 4Å: Chain A: R.128, I.154, A.239, D.275, E.290 Ligands: FAD.1, SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.128, A:R.128, A:D.275 GOL.7: 8 residues within 4Å: Chain A: A.111, T.126, L.127, I.235, C.236, V.237, G.238 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.127, A:I.235, A:G.238, A:G.238 Water bridges: A:R.112 GOL.8: 6 residues within 4Å: Chain A: D.42, P.44, S.45, K.48, W.320, R.327 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.42, A:W.320, A:R.327 Water bridges: A:R.327 GOL.9: 3 residues within 4Å: Chain A: P.37, H.38, Q.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.134 GOL.10: 2 residues within 4Å: Chain A: Y.292, Q.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.292, A:Q.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Friemann, R. et al., Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-03-10

Peptides

Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase

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