SMTL ID : 3efv.1 (2 other biounits)

Crystal Structure of a Putative Succinate-Semialdehyde Dehydrogenase from Salmonella typhimurium LT2 with bound NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: I.133, M.134, P.135, W.136, N.137, Q.142, R.145, K.160, H.161, A.162, P.163, N.193, V.196, T.211, G.212, S.213, A.216, A.219, I.220, E.234, L.235, G.236, C.268, R.312, E.365, F.367, L.393, F.431 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.211 Hydrogen bonds: A:W.136, A:R.145, A:R.145, A:K.160, A:S.213, A:S.213, A:E.234, A:G.237, A:R.312, A:E.365 Water bridges: A:K.160, A:N.193, A:S.213, A:V.214, A:Q.223, A:E.365, A:E.365 NAD.2: 28 residues within 4Å: Chain B: I.133, M.134, P.135, W.136, N.137, Q.142, R.145, K.160, H.161, A.162, P.163, N.193, V.196, T.211, G.212, S.213, A.216, A.219, I.220, E.234, L.235, G.236, G.237, C.268, E.365, F.367, L.393, F.431 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:T.211 Hydrogen bonds: B:W.136, B:R.145, B:R.145, B:K.160, B:K.160, B:S.213, B:E.234, B:E.234, B:G.237, B:E.365 Water bridges: B:N.137, B:N.193, B:N.193, B:Q.223, B:Q.223, B:Q.223, B:L.235, B:G.236 NAD.3: 29 residues within 4Å: Chain C: I.133, M.134, P.135, W.136, N.137, Q.142, R.145, K.160, H.161, A.162, P.163, N.193, V.196, T.211, G.212, S.213, A.216, A.219, I.220, E.234, L.235, G.236, G.237, C.268, R.312, E.365, F.367, L.393, F.431 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:T.211 Hydrogen bonds: C:W.136, C:R.145, C:R.145, C:K.160, C:S.213, C:S.213, C:E.234, C:G.237, C:R.312, C:E.365 Water bridges: C:W.136, C:N.193, C:N.193, C:N.193, C:Q.223, C:Q.223, C:Q.223 Salt bridges: C:R.312 NAD.4: 28 residues within 4Å: Chain D: I.133, M.134, P.135, W.136, N.137, Q.142, R.145, K.160, H.161, A.162, P.163, N.193, V.196, T.211, G.212, S.213, A.216, A.219, I.220, E.234, L.235, G.236, C.268, R.312, E.365, F.367, L.393, F.431 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:T.211 Hydrogen bonds: D:W.136, D:R.145, D:R.145, D:K.160, D:K.160, D:S.213, D:S.213, D:E.234, D:E.234, D:G.237, D:R.312, D:E.365 Water bridges: D:W.136, D:N.193, D:N.193, D:N.193, D:Q.223, D:Q.223, D:Q.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, H. et al., Structure and activity of the NAD(P)(+) -dependent succinate semialdehyde dehydrogenase YneI from Salmonella typhimurium. Proteins (2013)

Release Date

2008-11-04

Peptides

Putative succinate-semialdehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative succinate-semialdehyde dehydrogenase

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