SMTL ID : 3egv.1

Ribosomal protein L11 methyltransferase (PrmA) in complex with trimethylated ribosomal protein L11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: F.99, G.100, T.107, D.126, L.127, G.128, T.129, G.130, L.134, D.149, I.150, D.151, G.174, S.175, N.191, L.192, L.196 Chain B: X.1 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.128, A:I.150, A:S.175, A:S.175, A:N.191 Water bridges: A:D.151, A:Y.193, B:K.2

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: E.159, P.169, R.170, F.171, L.172 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.169, A:F.171 Water bridges: A:E.159, A:E.159, A:R.170, A:F.171 GOL.3: 6 residues within 4Å: Chain A: K.123, K.144, A.145, L.146, R.170, F.182 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.123, A:R.170, A:F.182 Water bridges: A:K.123, A:V.124 GOL.4: 3 residues within 4Å: Chain A: R.116, H.117, E.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.240 GOL.5: 4 residues within 4Å: Chain A: K.68, P.69, H.82, T.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.83 Water bridges: A:W.81, A:T.83

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain A: F.38 Ligand excluded by PLIP

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.7: 1 residues within 4Å: Chain B: K.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demirci, H. et al., Multiple-site trimethylation of ribosomal protein L11 by the PrmA methyltransferase. Structure (2008)

Release Date

2008-09-23

Peptides

Ribosomal protein L11 methyltransferase: A
50S ribosomal protein L11: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribosomal protein L11 methyltransferase

50S ribosomal protein L11

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