SMTL ID : 3ep7.1

Human AdoMetDC E256Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PYR: PYRUVIC ACID(Covalent)

PYR.1: 7 residues within 4Å: Chain A: V.64, L.65 Chain B: S.1, K.12, T.13, H.175 Ligands: SMM.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.65

1 x SMM: S-ADENOSYLMETHIONINE METHYL ESTER(Non-covalent)

SMM.2: 20 residues within 4Å: Chain A: F.7, L.65, S.66, E.67 Chain B: S.1, T.13, C.14, T.17, F.155, N.156, C.158, G.159, Y.160, S.161, H.175, I.176, T.177, P.178, E.179 Ligands: PYR.1 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:L.65, A:E.67, A:E.67, B:I.176 Water bridges: A:H.5 Hydrophobic interactions: B:F.155 pi-Cation interactions: B:F.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bale, S. et al., Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase. Biochemistry (2008)

Release Date

2008-12-23

Peptides

S-adenosylmethionine decarboxylase beta chain: A
S-adenosylmethionine decarboxylase alpha chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

S-adenosylmethionine decarboxylase beta chain

S-adenosylmethionine decarboxylase alpha chain

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