SMTL ID : 3epa.1

Human AdoMetDC E178Q mutant complexed with putrescine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 6 residues within 4Å: Chain A: F.7 Chain B: C.158, G.159, T.177, P.178, E.179 No protein-ligand interaction detected (PLIP)

1 x PYR: PYRUVIC ACID(Covalent)

PYR.2: 6 residues within 4Å: Chain A: V.64, L.65 Chain B: S.1, K.12, T.13, H.175 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.65 Water bridges: B:C.14

1 x PUT: 1,4-DIAMINOBUTANE(Non-covalent)

PUT.3: 8 residues within 4Å: Chain A: L.13, E.15 Chain B: F.43, S.45, D.106, T.108, F.217, Y.250 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.43 Hydrogen bonds: B:S.45, B:S.45, B:T.108, B:Y.250, B:Y.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bale, S. et al., Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase. Biochemistry (2008)

Release Date

2008-12-23

Peptides

S-adenosylmethionine decarboxylase beta chain: A
S-adenosylmethionine decarboxylase alpha chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

S-adenosylmethionine decarboxylase beta chain

S-adenosylmethionine decarboxylase alpha chain

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