SMTL ID : 3exj.1

Crystal Structure of a p53 Core Tetramer Bound to DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.78, A:H.81, A:C.140, A:C.144 ZN.3: 4 residues within 4Å: Chain B: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.78, B:H.81, B:C.140, B:C.144 ZN.4: 4 residues within 4Å: Chain E: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.78, E:H.81, E:C.140, E:C.144 ZN.6: 4 residues within 4Å: Chain F: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.78, F:H.81, F:C.140, F:C.144

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 7 residues within 4Å: Chain B: L.16, T.20, K.22, P.44, H.135 Chain E: K.67, S.68 13 PLIP interactions: 5 interactions with chain E, 8 interactions with chain B Hydrogen bonds: E:S.68, E:S.68, B:T.20, B:T.20 Water bridges: E:K.67 Salt bridges: E:K.67, E:K.67, B:K.22, B:H.135 Hydrophobic interactions: B:L.16, B:T.20, B:K.22, B:P.44 FLC.5: 7 residues within 4Å: Chain A: K.67, S.68 Chain F: L.16, T.20, K.22, P.44, H.135 12 PLIP interactions: 7 interactions with chain F, 5 interactions with chain A Hydrophobic interactions: F:L.16, F:T.20, F:K.22, F:P.44 Hydrogen bonds: F:T.20, A:S.68, A:S.68 Salt bridges: F:K.22, F:H.135, A:K.67, A:K.67 Water bridges: A:K.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malecka, K.A. et al., Crystal structure of a p53 core tetramer bound to DNA. Oncogene (2009)

Release Date

2008-12-16

Peptides

mouse p53 core domain: ABEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

mouse p53 core domain

Related Entries With Identical Sequence