SMTL ID : 3eym.1

Structure of Influenza Haemagglutinin in complex with an inhibitor of membrane fusion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

3 x EYK: 2-tert-butylbenzene-1,4-diol(Non-covalent)

EYK.1: 6 residues within 4Å: Chain B: Y.94, E.97, L.98 Chain D: R.54, K.58, L.99 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:R.54, D:L.99, B:Y.94, B:E.97, B:L.98 Hydrogen bonds: D:R.54 EYK.2: 7 residues within 4Å: Chain D: Y.94, E.97, L.98, A.101 Chain F: R.54, E.57, L.99 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:Y.94, D:E.97, D:L.98, D:A.101, F:R.54, F:L.99 EYK.3: 5 residues within 4Å: Chain B: R.54, V.55 Chain F: Y.94, E.97, L.98 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain F Hydrophobic interactions: B:R.54, B:V.55, F:Y.94, F:E.97, F:E.97, F:L.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russell, R.J. et al., Structure of influenza hemagglutinin in complex with an inhibitor of membrane fusion. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2009-01-13

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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