SMTL ID : 3eys.1

PFA1 Fab fragment complexed with pyro-Glu3-A-Beta (3-8)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PCA- PHE- ARG- HIS- ASP: pyro-Glu3-A-Beta (3-8) peptide(Non-covalent)

PCA-PHE-ARG-HIS-ASP.1: 17 residues within 4Å: Chain A: H.31, N.33, Y.37, G.96, S.97, V.99, L.101 Chain B: H.52, W.54, W.55, D.56, D.58, S.60, R.100, H.102, T.103, D.108 18 PLIP interactions: 10 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:H.52, B:W.54, B:H.102, A:Y.37, A:L.101, A:L.101 Hydrogen bonds: B:W.55, B:H.102, A:N.33, A:S.97, A:S.97 Salt bridges: B:D.56, B:D.58, B:H.102 pi-Cation interactions: B:W.54, B:H.102 pi-Stacking: A:H.31, A:Y.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain B: I.53, D.57, R.59, S.72, K.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.57, B:R.59, B:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardberg, A. et al., Structures of Abeta-related peptide--monoclonal antibody complexes. Biochemistry (2009)

Release Date

2009-05-12

Peptides

If kappa light chain: A
PFA1 Fab Heavy Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

If kappa light chain

PFA1 Fab Heavy Chain

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