SMTL ID : 3eyu.1

PFA1 Fab fragment complexed with Ror2(518-525)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- PHE- ARG- HIS- GLU- ALA: ROR2(518-525) peptide(Non-covalent)

GLU-PHE-ARG-HIS-GLU-ALA.1: 18 residues within 4Å: Chain A: H.31, S.32, N.33, N.35, Y.37, G.96, S.97, H.98, V.99, L.101 Chain B: W.54, W.55, D.56, D.58, S.60, H.102, T.103, D.108 15 PLIP interactions: 8 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:N.33, A:Y.37, A:L.101, B:W.54 Hydrogen bonds: A:S.32, A:S.97, B:W.55, B:W.55, B:H.102 Salt bridges: A:H.31, A:H.98, B:D.56, B:D.58, B:H.102 pi-Stacking: A:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardberg, A. et al., Structures of Abeta-related peptide--monoclonal antibody complexes. Biochemistry (2009)

Release Date

2009-05-12

Peptides

If kappa light chain: A
PFA1 Fab Heavy Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

If kappa light chain

PFA1 Fab Heavy Chain

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