- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-24-mer
- Ligands
- 192 x CD: CADMIUM ION(Non-covalent)
- 24 x IP0: 2-(1-methylethyl)phenol(Non-covalent)
IP0.9: 11 residues within 4Å:- Chain A: L.24, S.27, Y.28, R.59, L.81
- Chain V: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.240
7 PLIP interactions:3 interactions with chain V, 4 interactions with chain A- Hydrophobic interactions: V:Y.28, V:L.81, A:L.24, A:Y.28
- Water bridges: V:S.27, A:R.59
- Hydrogen bonds: A:S.27
IP0.20: 11 residues within 4Å:- Chain B: L.24, S.27, Y.28, R.59, L.81
- Chain W: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.251
7 PLIP interactions:3 interactions with chain W, 4 interactions with chain B- Hydrophobic interactions: W:Y.28, W:L.81, B:L.24, B:Y.28
- Water bridges: W:S.27, B:R.59
- Hydrogen bonds: B:S.27
IP0.31: 11 residues within 4Å:- Chain C: L.24, S.27, Y.28, R.59, L.81
- Chain X: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.262
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain X- Hydrophobic interactions: C:L.24, C:Y.28, X:Y.28, X:L.81
- Hydrogen bonds: C:S.27
- Water bridges: C:R.59, X:S.27
IP0.42: 11 residues within 4Å:- Chain D: L.24, S.27, Y.28, R.59, L.81
- Chain U: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.229
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain U- Hydrophobic interactions: D:L.24, D:Y.28, U:Y.28, U:L.81
- Hydrogen bonds: D:S.27
- Water bridges: D:R.59, U:S.27
IP0.53: 11 residues within 4Å:- Chain E: L.24, S.27, Y.28, R.59, L.81
- Chain Q: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.185
7 PLIP interactions:4 interactions with chain E, 3 interactions with chain Q- Hydrophobic interactions: E:L.24, E:Y.28, Q:Y.28, Q:L.81
- Hydrogen bonds: E:S.27
- Water bridges: E:R.59, Q:S.27
IP0.64: 11 residues within 4Å:- Chain F: L.24, S.27, Y.28, R.59, L.81
- Chain T: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.218
7 PLIP interactions:4 interactions with chain F, 3 interactions with chain T- Hydrophobic interactions: F:L.24, F:Y.28, T:Y.28, T:L.81
- Hydrogen bonds: F:S.27
- Water bridges: F:R.59, T:S.27
IP0.75: 11 residues within 4Å:- Chain G: L.24, S.27, Y.28, R.59, L.81
- Chain S: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.207
7 PLIP interactions:4 interactions with chain G, 3 interactions with chain S- Hydrophobic interactions: G:L.24, G:Y.28, S:Y.28, S:L.81
- Hydrogen bonds: G:S.27
- Water bridges: G:R.59, S:S.27
IP0.86: 11 residues within 4Å:- Chain H: L.24, S.27, Y.28, R.59, L.81
- Chain R: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.196
7 PLIP interactions:3 interactions with chain R, 4 interactions with chain H- Hydrophobic interactions: R:Y.28, R:L.81, H:L.24, H:Y.28
- Water bridges: R:S.27, H:R.59
- Hydrogen bonds: H:S.27
IP0.97: 11 residues within 4Å:- Chain I: L.24, S.27, Y.28, R.59, L.81
- Chain P: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.174
7 PLIP interactions:4 interactions with chain I, 3 interactions with chain P- Hydrophobic interactions: I:L.24, I:Y.28, P:Y.28, P:L.81
- Hydrogen bonds: I:S.27
- Water bridges: I:R.59, P:S.27
IP0.108: 11 residues within 4Å:- Chain J: L.24, S.27, Y.28, R.59, L.81
- Chain M: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.141
7 PLIP interactions:4 interactions with chain J, 3 interactions with chain M- Hydrophobic interactions: J:L.24, J:Y.28, M:Y.28, M:L.81
- Hydrogen bonds: J:S.27
- Water bridges: J:R.59, M:S.27
IP0.119: 11 residues within 4Å:- Chain K: L.24, S.27, Y.28, R.59, L.81
- Chain N: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.152
7 PLIP interactions:3 interactions with chain N, 4 interactions with chain K- Hydrophobic interactions: N:Y.28, N:L.81, K:L.24, K:Y.28
- Water bridges: N:S.27, K:R.59
- Hydrogen bonds: K:S.27
IP0.130: 11 residues within 4Å:- Chain L: L.24, S.27, Y.28, R.59, L.81
- Chain O: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.163
7 PLIP interactions:3 interactions with chain O, 4 interactions with chain L- Hydrophobic interactions: O:Y.28, O:L.81, L:L.24, L:Y.28
- Water bridges: O:S.27, L:R.59
- Hydrogen bonds: L:S.27
IP0.141: 11 residues within 4Å:- Chain J: L.24, S.27, Y.28, R.59, L.81
- Chain M: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.108
7 PLIP interactions:3 interactions with chain J, 4 interactions with chain M- Hydrophobic interactions: J:Y.28, J:L.81, M:L.24, M:Y.28
- Water bridges: J:S.27, M:R.59
- Hydrogen bonds: M:S.27
IP0.152: 11 residues within 4Å:- Chain K: L.24, S.27, Y.28, R.59, L.81
- Chain N: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.119
7 PLIP interactions:4 interactions with chain N, 3 interactions with chain K- Hydrophobic interactions: N:L.24, N:Y.28, K:Y.28, K:L.81
- Hydrogen bonds: N:S.27
- Water bridges: N:R.59, K:S.27
IP0.163: 11 residues within 4Å:- Chain L: L.24, S.27, Y.28, R.59, L.81
- Chain O: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.130
7 PLIP interactions:4 interactions with chain O, 3 interactions with chain L- Hydrophobic interactions: O:L.24, O:Y.28, L:Y.28, L:L.81
- Hydrogen bonds: O:S.27
- Water bridges: O:R.59, L:S.27
IP0.174: 11 residues within 4Å:- Chain I: L.24, S.27, Y.28, R.59, L.81
- Chain P: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.97
7 PLIP interactions:4 interactions with chain P, 3 interactions with chain I- Hydrophobic interactions: P:L.24, P:Y.28, I:Y.28, I:L.81
- Hydrogen bonds: P:S.27
- Water bridges: P:R.59, I:S.27
IP0.185: 11 residues within 4Å:- Chain E: L.24, S.27, Y.28, R.59, L.81
- Chain Q: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.53
7 PLIP interactions:4 interactions with chain Q, 3 interactions with chain E- Hydrophobic interactions: Q:L.24, Q:Y.28, E:Y.28, E:L.81
- Hydrogen bonds: Q:S.27
- Water bridges: Q:R.59, E:S.27
IP0.196: 11 residues within 4Å:- Chain H: L.24, S.27, Y.28, R.59, L.81
- Chain R: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.86
7 PLIP interactions:4 interactions with chain R, 3 interactions with chain H- Hydrophobic interactions: R:L.24, R:Y.28, H:Y.28, H:L.81
- Hydrogen bonds: R:S.27
- Water bridges: R:R.59, H:S.27
IP0.207: 11 residues within 4Å:- Chain G: L.24, S.27, Y.28, R.59, L.81
- Chain S: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.75
7 PLIP interactions:3 interactions with chain G, 4 interactions with chain S- Hydrophobic interactions: G:Y.28, G:L.81, S:L.24, S:Y.28
- Water bridges: G:S.27, S:R.59
- Hydrogen bonds: S:S.27
IP0.218: 11 residues within 4Å:- Chain F: L.24, S.27, Y.28, R.59, L.81
- Chain T: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.64
7 PLIP interactions:4 interactions with chain T, 3 interactions with chain F- Hydrophobic interactions: T:L.24, T:Y.28, F:Y.28, F:L.81
- Hydrogen bonds: T:S.27
- Water bridges: T:R.59, F:S.27
IP0.229: 11 residues within 4Å:- Chain D: L.24, S.27, Y.28, R.59, L.81
- Chain U: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.42
7 PLIP interactions:4 interactions with chain U, 3 interactions with chain D- Hydrophobic interactions: U:L.24, U:Y.28, D:Y.28, D:L.81
- Hydrogen bonds: U:S.27
- Water bridges: U:R.59, D:S.27
IP0.240: 11 residues within 4Å:- Chain A: L.24, S.27, Y.28, R.59, L.81
- Chain V: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.9
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain V- Hydrophobic interactions: A:Y.28, A:L.81, V:L.24, V:Y.28
- Water bridges: A:S.27, V:R.59
- Hydrogen bonds: V:S.27
IP0.251: 11 residues within 4Å:- Chain B: L.24, S.27, Y.28, R.59, L.81
- Chain W: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.20
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain W- Hydrophobic interactions: B:Y.28, B:L.81, W:L.24, W:Y.28
- Water bridges: B:S.27, W:R.59
- Hydrogen bonds: W:S.27
IP0.262: 11 residues within 4Å:- Chain C: L.24, S.27, Y.28, R.59, L.81
- Chain X: L.24, S.27, Y.28, R.59, L.81
- Ligands: IP0.31
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain X- Hydrophobic interactions: C:Y.28, C:L.81, X:L.24, X:Y.28
- Water bridges: C:S.27, X:R.59
- Hydrogen bonds: X:S.27
- 48 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 3 residues within 4Å:- Chain A: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.11: 4 residues within 4Å:- Chain A: K.143, D.146, H.147
- Chain P: E.45
Ligand excluded by PLIPSO4.21: 3 residues within 4Å:- Chain B: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.22: 4 residues within 4Å:- Chain B: K.143, D.146, H.147
- Chain O: E.45
Ligand excluded by PLIPSO4.32: 3 residues within 4Å:- Chain C: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.33: 4 residues within 4Å:- Chain C: K.143, D.146, H.147
- Chain M: E.45
Ligand excluded by PLIPSO4.43: 3 residues within 4Å:- Chain D: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.44: 4 residues within 4Å:- Chain D: K.143, D.146, H.147
- Chain N: E.45
Ligand excluded by PLIPSO4.54: 3 residues within 4Å:- Chain E: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.55: 4 residues within 4Å:- Chain E: K.143, D.146, H.147
- Chain V: E.45
Ligand excluded by PLIPSO4.65: 3 residues within 4Å:- Chain F: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.66: 4 residues within 4Å:- Chain F: K.143, D.146, H.147
- Chain U: E.45
Ligand excluded by PLIPSO4.76: 3 residues within 4Å:- Chain G: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.77: 4 residues within 4Å:- Chain G: K.143, D.146, H.147
- Chain W: E.45
Ligand excluded by PLIPSO4.87: 3 residues within 4Å:- Chain H: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.88: 4 residues within 4Å:- Chain H: K.143, D.146, H.147
- Chain X: E.45
Ligand excluded by PLIPSO4.98: 3 residues within 4Å:- Chain I: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.99: 4 residues within 4Å:- Chain I: K.143, D.146, H.147
- Chain Q: E.45
Ligand excluded by PLIPSO4.109: 3 residues within 4Å:- Chain J: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.110: 4 residues within 4Å:- Chain J: K.143, D.146, H.147
- Chain R: E.45
Ligand excluded by PLIPSO4.120: 3 residues within 4Å:- Chain K: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.121: 4 residues within 4Å:- Chain K: K.143, D.146, H.147
- Chain T: E.45
Ligand excluded by PLIPSO4.131: 3 residues within 4Å:- Chain L: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.132: 4 residues within 4Å:- Chain L: K.143, D.146, H.147
- Chain S: E.45
Ligand excluded by PLIPSO4.142: 3 residues within 4Å:- Chain M: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.143: 4 residues within 4Å:- Chain D: E.45
- Chain M: K.143, D.146, H.147
Ligand excluded by PLIPSO4.153: 3 residues within 4Å:- Chain N: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.154: 4 residues within 4Å:- Chain C: E.45
- Chain N: K.143, D.146, H.147
Ligand excluded by PLIPSO4.164: 3 residues within 4Å:- Chain O: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.165: 4 residues within 4Å:- Chain A: E.45
- Chain O: K.143, D.146, H.147
Ligand excluded by PLIPSO4.175: 3 residues within 4Å:- Chain P: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.176: 4 residues within 4Å:- Chain B: E.45
- Chain P: K.143, D.146, H.147
Ligand excluded by PLIPSO4.186: 3 residues within 4Å:- Chain Q: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.187: 4 residues within 4Å:- Chain J: E.45
- Chain Q: K.143, D.146, H.147
Ligand excluded by PLIPSO4.197: 3 residues within 4Å:- Chain R: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.198: 4 residues within 4Å:- Chain I: E.45
- Chain R: K.143, D.146, H.147
Ligand excluded by PLIPSO4.208: 3 residues within 4Å:- Chain S: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.209: 4 residues within 4Å:- Chain K: E.45
- Chain S: K.143, D.146, H.147
Ligand excluded by PLIPSO4.219: 3 residues within 4Å:- Chain T: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.220: 4 residues within 4Å:- Chain L: E.45
- Chain T: K.143, D.146, H.147
Ligand excluded by PLIPSO4.230: 3 residues within 4Å:- Chain U: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.231: 4 residues within 4Å:- Chain E: E.45
- Chain U: K.143, D.146, H.147
Ligand excluded by PLIPSO4.241: 3 residues within 4Å:- Chain V: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.242: 4 residues within 4Å:- Chain F: E.45
- Chain V: K.143, D.146, H.147
Ligand excluded by PLIPSO4.252: 3 residues within 4Å:- Chain W: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.253: 4 residues within 4Å:- Chain H: E.45
- Chain W: K.143, D.146, H.147
Ligand excluded by PLIPSO4.263: 3 residues within 4Å:- Chain X: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.264: 4 residues within 4Å:- Chain G: E.45
- Chain X: K.143, D.146, H.147
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vedula, L.S. et al., A unitary anesthetic binding site at high resolution. J.Biol.Chem. (2009)
- Release Date
- 2009-07-14
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-24-mer
- Ligands
- 192 x CD: CADMIUM ION(Non-covalent)
- 24 x IP0: 2-(1-methylethyl)phenol(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vedula, L.S. et al., A unitary anesthetic binding site at high resolution. J.Biol.Chem. (2009)
- Release Date
- 2009-07-14
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A