- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-24-mer
- Ligands
- 144 x CD: CADMIUM ION(Non-covalent)
- 24 x 2MY: 2,6-dimethylphenol(Non-covalent)
2MY.7: 7 residues within 4Å:- Chain A: S.27, Y.28, R.59, L.81
- Chain V: R.59, L.81
- Ligands: 2MY.196
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain V- Hydrophobic interactions: A:Y.28, V:L.81
2MY.16: 7 residues within 4Å:- Chain B: S.27, Y.28, R.59, L.81
- Chain W: R.59, L.81
- Ligands: 2MY.205
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain W- Hydrophobic interactions: B:Y.28, W:L.81
2MY.25: 7 residues within 4Å:- Chain C: S.27, Y.28, R.59, L.81
- Chain X: R.59, L.81
- Ligands: 2MY.214
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain X- Hydrophobic interactions: C:Y.28, X:L.81
2MY.34: 7 residues within 4Å:- Chain D: S.27, Y.28, R.59, L.81
- Chain U: R.59, L.81
- Ligands: 2MY.187
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain U- Hydrophobic interactions: D:Y.28, U:L.81
2MY.43: 7 residues within 4Å:- Chain E: S.27, Y.28, R.59, L.81
- Chain Q: R.59, L.81
- Ligands: 2MY.151
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain Q- Hydrophobic interactions: E:Y.28, Q:L.81
2MY.52: 7 residues within 4Å:- Chain F: S.27, Y.28, R.59, L.81
- Chain T: R.59, L.81
- Ligands: 2MY.178
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain T- Hydrophobic interactions: F:Y.28, T:L.81
2MY.61: 7 residues within 4Å:- Chain G: S.27, Y.28, R.59, L.81
- Chain S: R.59, L.81
- Ligands: 2MY.169
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain S- Hydrophobic interactions: G:Y.28, S:L.81
2MY.70: 7 residues within 4Å:- Chain H: S.27, Y.28, R.59, L.81
- Chain R: R.59, L.81
- Ligands: 2MY.160
2 PLIP interactions:1 interactions with chain R, 1 interactions with chain H- Hydrophobic interactions: R:L.81, H:Y.28
2MY.79: 7 residues within 4Å:- Chain I: S.27, Y.28, R.59, L.81
- Chain P: R.59, L.81
- Ligands: 2MY.142
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain P- Hydrophobic interactions: I:Y.28, P:L.81
2MY.88: 7 residues within 4Å:- Chain J: S.27, Y.28, R.59, L.81
- Chain M: R.59, L.81
- Ligands: 2MY.115
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain J- Hydrophobic interactions: M:L.81, J:Y.28
2MY.97: 7 residues within 4Å:- Chain K: S.27, Y.28, R.59, L.81
- Chain N: R.59, L.81
- Ligands: 2MY.124
2 PLIP interactions:1 interactions with chain N, 1 interactions with chain K- Hydrophobic interactions: N:L.81, K:Y.28
2MY.106: 7 residues within 4Å:- Chain L: S.27, Y.28, R.59, L.81
- Chain O: R.59, L.81
- Ligands: 2MY.133
2 PLIP interactions:1 interactions with chain L, 1 interactions with chain O- Hydrophobic interactions: L:Y.28, O:L.81
2MY.115: 7 residues within 4Å:- Chain J: R.59, L.81
- Chain M: S.27, Y.28, R.59, L.81
- Ligands: 2MY.88
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain J- Hydrophobic interactions: M:Y.28, J:L.81
2MY.124: 7 residues within 4Å:- Chain K: R.59, L.81
- Chain N: S.27, Y.28, R.59, L.81
- Ligands: 2MY.97
2 PLIP interactions:1 interactions with chain N, 1 interactions with chain K- Hydrophobic interactions: N:Y.28, K:L.81
2MY.133: 7 residues within 4Å:- Chain L: R.59, L.81
- Chain O: S.27, Y.28, R.59, L.81
- Ligands: 2MY.106
2 PLIP interactions:1 interactions with chain O, 1 interactions with chain L- Hydrophobic interactions: O:Y.28, L:L.81
2MY.142: 7 residues within 4Å:- Chain I: R.59, L.81
- Chain P: S.27, Y.28, R.59, L.81
- Ligands: 2MY.79
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain P- Hydrophobic interactions: I:L.81, P:Y.28
2MY.151: 7 residues within 4Å:- Chain E: R.59, L.81
- Chain Q: S.27, Y.28, R.59, L.81
- Ligands: 2MY.43
2 PLIP interactions:1 interactions with chain Q, 1 interactions with chain E- Hydrophobic interactions: Q:Y.28, E:L.81
2MY.160: 7 residues within 4Å:- Chain H: R.59, L.81
- Chain R: S.27, Y.28, R.59, L.81
- Ligands: 2MY.70
2 PLIP interactions:1 interactions with chain R, 1 interactions with chain H- Hydrophobic interactions: R:Y.28, H:L.81
2MY.169: 7 residues within 4Å:- Chain G: R.59, L.81
- Chain S: S.27, Y.28, R.59, L.81
- Ligands: 2MY.61
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain S- Hydrophobic interactions: G:L.81, S:Y.28
2MY.178: 7 residues within 4Å:- Chain F: R.59, L.81
- Chain T: S.27, Y.28, R.59, L.81
- Ligands: 2MY.52
2 PLIP interactions:1 interactions with chain T, 1 interactions with chain F- Hydrophobic interactions: T:Y.28, F:L.81
2MY.187: 7 residues within 4Å:- Chain D: R.59, L.81
- Chain U: S.27, Y.28, R.59, L.81
- Ligands: 2MY.34
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain U- Hydrophobic interactions: D:L.81, U:Y.28
2MY.196: 7 residues within 4Å:- Chain A: R.59, L.81
- Chain V: S.27, Y.28, R.59, L.81
- Ligands: 2MY.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain V- Hydrophobic interactions: A:L.81, V:Y.28
2MY.205: 7 residues within 4Å:- Chain B: R.59, L.81
- Chain W: S.27, Y.28, R.59, L.81
- Ligands: 2MY.16
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain W- Hydrophobic interactions: B:L.81, W:Y.28
2MY.214: 7 residues within 4Å:- Chain C: R.59, L.81
- Chain X: S.27, Y.28, R.59, L.81
- Ligands: 2MY.25
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain X- Hydrophobic interactions: C:L.81, X:Y.28
- 48 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 3 residues within 4Å:- Chain A: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.9: 4 residues within 4Å:- Chain A: K.143, D.146, H.147
- Chain P: E.45
Ligand excluded by PLIPSO4.17: 3 residues within 4Å:- Chain B: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.18: 4 residues within 4Å:- Chain B: K.143, D.146, H.147
- Chain O: E.45
Ligand excluded by PLIPSO4.26: 3 residues within 4Å:- Chain C: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain C: K.143, D.146, H.147
- Chain M: E.45
Ligand excluded by PLIPSO4.35: 3 residues within 4Å:- Chain D: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.36: 4 residues within 4Å:- Chain D: K.143, D.146, H.147
- Chain N: E.45
Ligand excluded by PLIPSO4.44: 3 residues within 4Å:- Chain E: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.45: 4 residues within 4Å:- Chain E: K.143, D.146, H.147
- Chain V: E.45
Ligand excluded by PLIPSO4.53: 3 residues within 4Å:- Chain F: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.54: 4 residues within 4Å:- Chain F: K.143, D.146, H.147
- Chain U: E.45
Ligand excluded by PLIPSO4.62: 3 residues within 4Å:- Chain G: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.63: 4 residues within 4Å:- Chain G: K.143, D.146, H.147
- Chain W: E.45
Ligand excluded by PLIPSO4.71: 3 residues within 4Å:- Chain H: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.72: 4 residues within 4Å:- Chain H: K.143, D.146, H.147
- Chain X: E.45
Ligand excluded by PLIPSO4.80: 3 residues within 4Å:- Chain I: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.81: 4 residues within 4Å:- Chain I: K.143, D.146, H.147
- Chain Q: E.45
Ligand excluded by PLIPSO4.89: 3 residues within 4Å:- Chain J: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.90: 4 residues within 4Å:- Chain J: K.143, D.146, H.147
- Chain R: E.45
Ligand excluded by PLIPSO4.98: 3 residues within 4Å:- Chain K: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.99: 4 residues within 4Å:- Chain K: K.143, D.146, H.147
- Chain T: E.45
Ligand excluded by PLIPSO4.107: 3 residues within 4Å:- Chain L: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.108: 4 residues within 4Å:- Chain L: K.143, D.146, H.147
- Chain S: E.45
Ligand excluded by PLIPSO4.116: 3 residues within 4Å:- Chain M: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.117: 4 residues within 4Å:- Chain D: E.45
- Chain M: K.143, D.146, H.147
Ligand excluded by PLIPSO4.125: 3 residues within 4Å:- Chain N: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.126: 4 residues within 4Å:- Chain C: E.45
- Chain N: K.143, D.146, H.147
Ligand excluded by PLIPSO4.134: 3 residues within 4Å:- Chain O: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.135: 4 residues within 4Å:- Chain A: E.45
- Chain O: K.143, D.146, H.147
Ligand excluded by PLIPSO4.143: 3 residues within 4Å:- Chain P: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.144: 4 residues within 4Å:- Chain B: E.45
- Chain P: K.143, D.146, H.147
Ligand excluded by PLIPSO4.152: 3 residues within 4Å:- Chain Q: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.153: 4 residues within 4Å:- Chain J: E.45
- Chain Q: K.143, D.146, H.147
Ligand excluded by PLIPSO4.161: 3 residues within 4Å:- Chain R: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.162: 4 residues within 4Å:- Chain I: E.45
- Chain R: K.143, D.146, H.147
Ligand excluded by PLIPSO4.170: 3 residues within 4Å:- Chain S: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.171: 4 residues within 4Å:- Chain K: E.45
- Chain S: K.143, D.146, H.147
Ligand excluded by PLIPSO4.179: 3 residues within 4Å:- Chain T: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.180: 4 residues within 4Å:- Chain L: E.45
- Chain T: K.143, D.146, H.147
Ligand excluded by PLIPSO4.188: 3 residues within 4Å:- Chain U: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.189: 4 residues within 4Å:- Chain E: E.45
- Chain U: K.143, D.146, H.147
Ligand excluded by PLIPSO4.197: 3 residues within 4Å:- Chain V: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.198: 4 residues within 4Å:- Chain F: E.45
- Chain V: K.143, D.146, H.147
Ligand excluded by PLIPSO4.206: 3 residues within 4Å:- Chain W: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.207: 4 residues within 4Å:- Chain H: E.45
- Chain W: K.143, D.146, H.147
Ligand excluded by PLIPSO4.215: 3 residues within 4Å:- Chain X: R.5, Q.6, N.7
Ligand excluded by PLIPSO4.216: 4 residues within 4Å:- Chain G: E.45
- Chain X: K.143, D.146, H.147
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vedula, L.S. et al., A unitary anesthetic binding site at high resolution. J.Biol.Chem. (2009)
- Release Date
- 2009-07-14
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-24-mer
- Ligands
- 144 x CD: CADMIUM ION(Non-covalent)
- 24 x 2MY: 2,6-dimethylphenol(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vedula, L.S. et al., A unitary anesthetic binding site at high resolution. J.Biol.Chem. (2009)
- Release Date
- 2009-07-14
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A