SMTL ID : 3f6k.1

Crystal structure of the Vps10p domain of human sortilin/NTS3 in complex with neurotensin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: A.278, A.279, N.280, D.281, N.329, T.331, Y.337 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.281, A:D.281 Water bridges: A:N.280

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 9 residues within 4Å: Chain A: D.72, Y.73, K.75, S.503, M.504, N.505, D.526, Q.575, R.578 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.72 Water bridges: A:E.71

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 3 residues within 4Å: Chain A: N.396, H.462, S.464 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.396, A:Y.447, A:Y.447

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: D.14, K.18, E.532 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.14, A:K.18, A:E.532 Water bridges: A:R.13, A:K.18, A:E.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quistgaard, E.M. et al., Ligands bind to Sortilin in the tunnel of a ten-bladed beta-propeller domain. Nat.Struct.Mol.Biol. (2009)

Release Date

2008-12-30

Peptides

Sortilin: A
Neurotensin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
N

Sortilin

Neurotensin

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