SMTL ID : 4po7.1

Structure of the Sortilin:neurotensin complex at excess neurotensin concentration

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

hetero-1-2-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: A.278, A.279, N.280, N.329, T.331, Y.337 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 9 residues within 4Å: Chain A: D.72, Y.73, K.75, R.502, S.503, M.504, N.505, D.526, R.578 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.72

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: L.83, N.85, F.130, Q.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.132

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 10 residues within 4Å: Chain A: N.368, S.369, E.370, G.415, S.416, V.417, P.426, D.427, Y.429, K.440 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.370, A:G.415, A:D.427, A:Y.429, A:K.440

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quistgaard, E.M. et al., Revisiting the structure of the Vps10 domain of human sortilin and its interaction with neurotensin. Protein Sci. (2014)

Release Date

2014-07-23

Peptides

Sortilin: A
Neurotensin/neuromedin N: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
N

C
P

Sortilin

Neurotensin/neuromedin N

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