- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 2 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain B: D.124
- Ligands: CDP.3
No protein-ligand interaction detected (PLIP)MG.4: 2 residues within 4Å:- Chain C: R.91
- Ligands: CDP.5
No protein-ligand interaction detected (PLIP)MG.7: 2 residues within 4Å:- Chain E: D.124
- Ligands: CDP.8
No protein-ligand interaction detected (PLIP)MG.9: 2 residues within 4Å:- Chain F: R.91
- Ligands: CDP.10
No protein-ligand interaction detected (PLIP)- 4 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.3: 13 residues within 4Å:- Chain B: K.14, Y.55, H.58, Y.63, L.67, R.91, Q.94, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.2
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:I.115
- Hydrogen bonds: B:K.14, B:Y.55, B:Q.94, B:T.97, B:R.108, B:N.118, B:N.118
- Water bridges: B:R.91, B:R.91
- Salt bridges: B:H.58, B:R.91, B:R.108
- pi-Stacking: B:Y.63
CDP.5: 13 residues within 4Å:- Chain C: K.14, Y.55, H.58, Y.63, L.67, R.91, Q.94, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.4
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:I.115
- Hydrogen bonds: C:K.14, C:Y.55, C:Q.94, C:T.97, C:R.108, C:R.116, C:N.118, C:N.118
- Salt bridges: C:H.58, C:R.91, C:R.108
- pi-Stacking: C:Y.63
CDP.8: 13 residues within 4Å:- Chain E: K.14, Y.55, H.58, Y.63, L.67, R.91, Q.94, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.7
12 PLIP interactions:12 interactions with chain E- Hydrophobic interactions: E:I.115
- Hydrogen bonds: E:K.14, E:Q.94, E:R.108, E:N.118, E:N.118
- Water bridges: E:R.91, E:R.91
- Salt bridges: E:H.58, E:R.91, E:R.108
- pi-Stacking: E:Y.63
CDP.10: 13 residues within 4Å:- Chain F: K.14, Y.55, H.58, Y.63, L.67, R.91, Q.94, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.9
11 PLIP interactions:11 interactions with chain F- Hydrophobic interactions: F:I.115
- Hydrogen bonds: F:K.14, F:Q.94, F:R.108, F:R.116, F:N.118, F:N.118
- Salt bridges: F:H.58, F:R.91, F:R.108
- pi-Stacking: F:Y.63
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-25
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
FD
AE
BF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 2 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-25
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
FD
AE
BF
F