SMTL ID : 3fdj.1

The structure of a DegV family protein from Eubacterium eligens.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.1: 20 residues within 4Å: Chain A: L.27, T.60, I.83, T.84, M.87, S.88, G.89, S.117, T.118, L.155, L.159, R.170, A.190, G.194, T.195, L.196, L.261, Y.265, A.266, I.272 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.60, A:G.89, A:K.116, A:Y.265 Water bridges: A:T.60, A:R.170

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.154, A.190, S.192 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.192, A:E.197

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 5 residues within 4Å: Chain A: G.86, G.169, R.170, V.171, S.172 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.86

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: K.160, A.179, V.181, I.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.179, A:I.184

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 2 residues within 4Å: Chain A: I.184, R.203 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.201, A:R.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a DegV family protein from Eubacterium eligens. TO BE PUBLISHED

Release Date

2009-02-03

Peptides

DegV family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DegV family protein

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