SMTL ID : 3fg4.1 (4 other biounits)

Crystal structure of Delta413-417:GS I805A LOX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.387, H.392, H.573, N.577, I.696 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.387, A:H.392, A:H.573, H2O.7

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: H.20, G.22, D.82, D.84 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.20, A:G.22, A:D.82, A:D.82, A:D.84, H2O.4 CA.3: 1 residues within 4Å: Chain A: E.54 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.54, H2O.4, H2O.4, H2O.8, H2O.8 CA.20: 1 residues within 4Å: Chain A: N.658 No protein-ligand interaction detected (PLIP)

1 x ACD: ARACHIDONIC ACID(Non-covalent)

ACD.4: 4 residues within 4Å: Chain A: L.393, I.426, D.427, G.430 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.393

7 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 6 residues within 4Å: Chain A: F.235, Q.238, F.239, E.378, H.583, N.589 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.235 Salt bridges: A:H.583 ACY.6: 5 residues within 4Å: Chain A: H.164, S.178, Y.181, Q.182, I.429 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.182 Water bridges: A:D.165, A:D.165 Salt bridges: A:H.164 ACY.7: 5 residues within 4Å: Chain A: S.444, Y.584, A.592, A.623, V.627 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.627 Water bridges: A:A.592 ACY.8: 4 residues within 4Å: Chain A: N.266, A.267, L.269 Ligands: GOL.12 No protein-ligand interaction detected (PLIP) ACY.9: 4 residues within 4Å: Chain A: F.633, Y.639, E.688, R.689 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.633 Hydrogen bonds: A:Y.639 Water bridges: A:R.689 Salt bridges: A:R.689 ACY.10: 7 residues within 4Å: Chain A: L.192, G.195, S.196, T.199, L.213, S.618, A.621 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.199 ACY.11: 4 residues within 4Å: Chain A: L.336, G.337, P.486, G.487 No protein-ligand interaction detected (PLIP)

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 7 residues within 4Å: Chain A: N.266, L.269, D.270, R.271, G.272, K.273 Ligands: ACY.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.266, A:N.266, A:D.270, A:G.272 GOL.13: 6 residues within 4Å: Chain A: G.506, I.509, A.510, R.555, E.556, K.559 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.559, A:K.559 GOL.14: 6 residues within 4Å: Chain A: V.291, F.381, N.385, R.390, C.459, E.462 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.385, A:R.390, A:R.390, A:C.459 GOL.15: 5 residues within 4Å: Chain A: E.202, N.203, D.205, S.206, D.209 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.202, A:D.205, A:D.205, A:S.206 Water bridges: A:S.206 GOL.16: 9 residues within 4Å: Chain A: G.16, D.17, R.18, F.86, N.88, F.106, R.638, S.644, A.645 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.17, A:D.17, A:R.18, A:N.88, A:S.644 Water bridges: A:E.14, A:R.18, A:S.644 GOL.17: 7 residues within 4Å: Chain A: D.492, D.493, A.496, I.667, K.670, I.671, R.674 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.667, A:R.674 GOL.18: 2 residues within 4Å: Chain A: D.662, E.665 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.662 Water bridges: A:D.662, A:D.662 GOL.21: 4 residues within 4Å: Chain A: D.44, K.45, G.46, S.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.44, A:G.46 Water bridges: A:D.24

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.19: 5 residues within 4Å: Chain A: E.119, A.120, W.648, E.649, D.650 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neau, D.B. et al., The 1.85 A structure of an 8R-lipoxygenase suggests a general model for lipoxygenase product specificity. Biochemistry (2009)

Release Date

2009-08-18

Peptides

Allene oxide synthase-lipoxygenase protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Allene oxide synthase-lipoxygenase protein

Related Entries With Identical Sequence