SMTL ID : 3fh7.1

Leukotriene A4 Hydrolase complexed with inhibitor 4-[(2S)-2-{[4-(4-chlorophenoxy)phenoxy]methyl}pyrrolidin-1-yl]butanoate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 Ligands: 25P.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319

3 x YB: YTTERBIUM (III) ION(Non-covalent)(Non-functional Binders)

YB.2: 2 residues within 4Å: Chain A: D.482 Ligands: ACT.5 5 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:D.482, A:D.482, ACT.5, H2O.17, H2O.20 YB.3: 1 residues within 4Å: Chain A: D.176 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.176 YB.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain A: K.480, D.482 Ligands: YB.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.480 Water bridges: A:K.480

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.6: 7 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.509 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.349, A:N.352 Water bridges: A:Q.506, A:R.538

1 x 25P: 4-[(2S)-2-{[4-(4-chlorophenoxy)phenoxy]methyl}pyrrolidin-1-yl]butanoate(Non-covalent)

25P.7: 22 residues within 4Å: Chain A: Q.135, Q.137, A.138, Y.268, G.270, M.271, E.272, H.296, E.297, H.300, W.312, F.315, E.319, V.368, L.370, P.375, D.376, A.378, Y.379, P.383, Y.384 Ligands: ZN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.135, A:Q.137, A:Q.137, A:A.138, A:Y.268, A:Y.268, A:F.315, A:L.370, A:P.375, A:Y.379 Hydrogen bonds: A:Y.384 Salt bridges: A:H.296, A:H.300 pi-Stacking: A:F.315 pi-Cation interactions: A:Y.268

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 8 residues within 4Å: Chain A: F.30, R.33, W.118, L.119, T.120, P.121, P.130, Y.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.33, A:R.33, A:Y.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandanayaka, V. et al., Discovery of 4-[(2S)-2-{[4-(4-chlorophenoxy)phenoxy]methyl}-1-pyrrolidinyl]butanoic acid (DG-051) as a novel leukotriene A4 hydrolase inhibitor of leukotriene B4 biosynthesis. J.Med.Chem. (2010)

Release Date

2010-01-05

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

Related Entries With Identical Sequence