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SMTL ID : 3fmf.2
(1 other biounit)
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase complexed with 7,8 diaminopelargonic acid carbamate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.05 Å
Oligo State
homo-dimer
Ligands
2 x
DSD
:
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
(Non-covalent)
DSD.1:
15 residues within 4Å:
Chain A:
L.168
,
G.169
,
T.170
,
L.171
,
N.172
Chain B:
T.36
,
K.62
,
Q.65
,
T.66
,
P.96
,
M.97
,
A.98
,
A.135
,
G.136
,
V.140
14
PLIP interactions
:
5 interactions with chain A
,
9 interactions with chain B
Hydrophobic interactions:
A:L.168
,
B:A.98
,
B:V.140
Hydrogen bonds:
A:G.169
,
A:L.171
,
A:N.172
,
B:K.62
,
B:T.66
,
B:T.66
,
B:T.66
,
B:G.136
Water bridges:
A:N.172
,
B:T.36
,
B:G.37
DSD.2:
16 residues within 4Å:
Chain A:
K.62
,
V.64
,
Q.65
,
T.66
,
R.70
,
P.96
,
M.97
,
A.98
,
A.135
,
G.136
,
V.140
Chain B:
L.168
,
G.169
,
T.170
,
L.171
,
N.172
20
PLIP interactions
:
13 interactions with chain A
,
7 interactions with chain B
Hydrophobic interactions:
A:A.98
,
A:V.140
,
B:L.168
,
B:L.168
Hydrogen bonds:
A:K.62
,
A:T.66
,
A:T.66
,
A:T.66
,
A:R.70
,
A:G.136
,
B:G.169
,
B:L.171
,
B:N.172
Water bridges:
A:T.36
,
A:T.36
,
A:K.40
,
A:Q.65
,
A:Q.65
,
B:G.169
,
B:N.172
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Dey, S. et al., Structural characterization of the Mycobacterium tuberculosis biotin biosynthesis enzymes 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase . Biochemistry (2010)
Release Date
2009-06-30
Peptides
Dethiobiotin synthetase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Dethiobiotin synthetase
Related Entries With Identical Sequence
3fgn.1
|
3fgn.2
|
3fmf.1
|
3fmi.1
|
3fmi.2
|
3fpa.1
|
3fpa.2
|
3fpa.3
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