- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x DTB: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID(Non-covalent)
DTB.3: 15 residues within 4Å:- Chain A: L.168, G.169, T.170, L.171, N.172, N.207
- Chain B: T.36, T.66, R.70, M.97, A.98, A.135, G.136, V.140
- Ligands: PO4.5
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:A.98, B:A.135, A:L.168
- Hydrogen bonds: B:T.66, B:R.70, A:G.169, A:L.171, A:N.172
- Water bridges: B:K.62, B:T.66
DTB.7: 14 residues within 4Å:- Chain A: T.36, T.66, R.70, D.72, P.96, M.97, A.98, V.140
- Chain B: L.168, G.169, T.170, L.171, N.172
- Ligands: PO4.2
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:T.36, A:A.98, A:V.140
- Hydrogen bonds: A:T.36, A:T.36, A:R.70, A:D.72, B:G.169, B:L.171, B:N.172
- Water bridges: B:N.172
DTB.11: 14 residues within 4Å:- Chain C: L.168, G.169, T.170, L.171, N.172
- Chain D: T.36, T.66, R.70, D.72, M.97, A.98, G.136, V.140
- Ligands: PO4.14
9 PLIP interactions:6 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:A.98
- Hydrogen bonds: D:T.36, D:T.36, D:R.70, D:R.70, D:D.72, C:G.169, C:L.171, C:N.172
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: T.41, D.74, E.133
- Ligands: PO4.1, PO4.2
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:T.41, A:D.74, A:E.133
MG.8: 5 residues within 4Å:- Chain B: T.41, D.74, E.133
- Ligands: PO4.5, PO4.6
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:T.41, B:D.74, B:E.133
MG.12: 6 residues within 4Å:- Chain C: T.41, K.62, D.74, E.133
- Ligands: PO4.9, PO4.10
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:T.41, C:D.74, C:E.133, H2O.5
MG.15: 5 residues within 4Å:- Chain D: T.41, D.74, E.133
- Ligands: PO4.13, PO4.14
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:T.41, D:D.74, D:E.133
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dey, S. et al., Structural characterization of the Mycobacterium tuberculosis biotin biosynthesis enzymes 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase. Biochemistry (2010)
- Release Date
- 2009-06-30
- Peptides
- Dethiobiotin synthetase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x DTB: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dey, S. et al., Structural characterization of the Mycobacterium tuberculosis biotin biosynthesis enzymes 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase. Biochemistry (2010)
- Release Date
- 2009-06-30
- Peptides
- Dethiobiotin synthetase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D