SMTL ID : 3fqj.1

Crystal Structure of the Mouse Dom3Z in Complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.212, D.256, E.273, L.274, K.275 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.256, A:L.274

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 12 residues within 4Å: Chain A: L.74, R.78, R.115, E.121, W.151, R.152, G.153, A.235, C.237, G.253, E.254, Q.300 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.78, A:R.78, A:R.115, A:G.153, A:E.254, A:E.254, A:E.254, A:Q.300 Water bridges: A:R.78, A:D.116, A:R.152, A:H.154 Salt bridges: A:E.121, A:R.152, A:R.152 pi-Cation interactions: A:R.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, S. et al., Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1. Nature (2009)

Release Date

2009-02-03

Peptides

Protein Dom3Z: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Dom3Z

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