SMTL ID : 3ftu.1

Leukotriene A4 hydrolase in complex with dihydroresveratrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319, H2O.9

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 2 residues within 4Å: Chain A: D.482 Ligands: ACT.4 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.482, A:D.482, H2O.1, H2O.8, ACT.4

1 x RE2: 5-[2-(4-hydroxyphenyl)ethyl]benzene-1,3-diol(Non-covalent)

RE2.3: 14 residues within 4Å: Chain A: Q.137, A.138, Y.268, W.312, D.313, F.315, F.363, V.368, L.370, P.375, D.376, A.378, Y.379, P.383 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.137, A:A.138, A:F.315, A:F.315, A:F.315, A:V.368, A:L.370, A:P.375, A:Y.379, A:P.383 Hydrogen bonds: A:Y.268, A:D.313, A:F.315, A:F.363

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: K.480, D.482 Ligands: YB.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.480 Water bridges: A:K.480, A:D.482

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 8 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.506, Q.509 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.349, A:N.352, A:Q.506 Water bridges: A:G.348, A:R.538

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., Discovery of leukotriene A4 hydrolase inhibitors using metabolomics biased fragment crystallography. J.Med.Chem. (2009)

Release Date

2009-07-28

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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