SMTL ID : 3ftz.1

Leukotriene A4 hydrolase in complex with fragment 2-(pyridin-3-ylmethoxy)aniline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 Ligands: ACT.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319, ACT.6

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 3 residues within 4Å: Chain A: D.482 Ligands: ACT.4, ACT.5 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:D.482, A:D.482, ACT.4, ACT.5, H2O.5

1 x 848: 2-(pyridin-3-ylmethoxy)aniline(Non-covalent)

848.3: 10 residues within 4Å: Chain A: Q.137, A.138, Y.268, W.312, F.315, V.368, P.375, D.376, A.378, Y.379 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.137, A:A.138, A:F.315, A:V.368, A:P.375, A:A.378, A:Y.379 Hydrogen bonds: A:A.138, A:P.375, A:D.376 Water bridges: A:Q.135 pi-Stacking: A:F.315

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: K.480, D.482 Ligands: YB.2, ACT.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.480 Water bridges: A:D.482 ACT.5: 2 residues within 4Å: Ligands: YB.2, ACT.4 No protein-ligand interaction detected (PLIP) ACT.6: 8 residues within 4Å: Chain A: G.270, E.272, H.296, E.297, H.300, E.319, Y.384 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.296, A:H.300

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 7 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.509 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.349, A:E.349 Water bridges: A:G.348, A:Q.506, A:R.538 IMD.8: 7 residues within 4Å: Chain A: S.289, L.290, S.497, H.498, N.501, N.532, E.534 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.497, A:N.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandanayaka, V. et al., Discovery of 4-[(2S)-2-{[4-(4-chlorophenoxy)phenoxy]methyl}-1-pyrrolidinyl]butanoic acid (DG-051) as a novel leukotriene A4 hydrolase inhibitor of leukotriene B4 biosynthesis. J.Med.Chem. (2010)

Release Date

2010-01-05

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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