SMTL ID : 3fu3.1

Leukotriene A4 hydrolase in complex with fragment 4-(2-amino-1,3-thiazol-4-yl)phenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 Ligands: ACT.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319, ACT.6

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 2 residues within 4Å: Chain A: D.482 Ligands: ACT.5 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.482, A:D.482, H2O.3, H2O.4, ACT.5

2 x 92G: 4-(2-amino-1,3-thiazol-4-yl)phenol(Non-covalent)

92G.3: 9 residues within 4Å: Chain A: L.344, G.348, Q.351, K.458, M.463, I.470, E.502, Q.506 Ligands: IMD.7 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.344, A:L.344, A:L.344, A:I.470 Hydrogen bonds: A:G.348, A:K.458, A:K.458, A:E.502, A:Q.506 92G.4: 12 residues within 4Å: Chain A: A.138, W.312, F.315, F.363, K.365, L.366, V.368, L.370, P.375, A.378, Y.379, P.383 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.315, A:F.315, A:L.370, A:Y.379 Hydrogen bonds: A:K.365, A:P.375 Water bridges: A:W.316

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain A: K.480, D.482 Ligands: YB.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.480 Water bridges: A:K.480, A:D.482 ACT.6: 8 residues within 4Å: Chain A: G.270, E.272, H.296, E.297, H.300, E.319, Y.384 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.296, A:H.300

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 9 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.506, Q.509 Ligands: 92G.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.349, A:E.349, A:N.352, A:Q.506 IMD.8: 8 residues within 4Å: Chain A: S.289, L.290, S.497, H.498, N.501, N.532, E.534, I.535 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.289, A:S.497, A:N.532 Water bridges: A:N.501

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., Discovery of leukotriene A4 hydrolase inhibitors using metabolomics biased fragment crystallography. J.Med.Chem. (2009)

Release Date

2009-07-28

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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