SMTL ID : 3ful.1

Leukotriene A4 hydrolase in complex with pyridin-4-yl[4-(2-pyrrolidin-1-ylethoxy)phenyl]methanone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319, H2O.1

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 1 residues within 4Å: Chain A: D.48 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.48, A:D.48

1 x 52D: pyridin-4-yl[4-(2-pyrrolidin-1-ylethoxy)phenyl]methanone(Non-covalent)

52D.3: 16 residues within 4Å: Chain A: Q.135, Q.137, A.138, Y.268, G.270, M.271, W.312, F.315, V.368, L.370, P.375, D.376, A.378, Y.379, P.383, Y.384 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.137, A:A.138, A:Y.268, A:Y.268, A:W.312, A:F.315, A:F.315, A:F.315, A:P.375, A:Y.379 Hydrogen bonds: A:D.376 pi-Cation interactions: A:Y.268

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 7 residues within 4Å: Chain A: S.289, L.290, S.497, H.498, N.501, N.532, E.534 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.497, A:N.532 pi-Stacking: A:H.498 IMD.5: 8 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.506, Q.509 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.349, A:E.349, A:N.352 Water bridges: A:Q.506, A:R.538

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandanayaka, V. et al., Discovery of 4-[(2S)-2-{[4-(4-chlorophenoxy)phenoxy]methyl}-1-pyrrolidinyl]butanoic acid (DG-051) as a novel leukotriene A4 hydrolase inhibitor of leukotriene B4 biosynthesis. J.Med.Chem. (2010)

Release Date

2010-01-05

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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