SMTL ID : 3fun.1

Leukotriene A4 hydrolase in complex with {4-[(2R)-pyrrolidin-2-ylmethoxy]phenyl}(4-thiophen-3-ylphenyl)methanone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319, H2O.8

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 2 residues within 4Å: Chain A: D.482 Ligands: ACT.4 5 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:D.482, A:D.482, ACT.4, H2O.6, H2O.6

1 x 798: {4-[(2R)-pyrrolidin-2-ylmethoxy]phenyl}(4-thiophen-3-ylphenyl)methanone(Non-covalent)

798.3: 20 residues within 4Å: Chain A: Q.135, Q.137, A.138, Y.268, G.270, M.271, W.312, F.315, F.363, K.365, L.366, V.368, L.370, P.375, D.376, A.378, Y.379, V.382, P.383, Y.384 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.137, A:A.138, A:Y.268, A:Y.268, A:F.315, A:F.315, A:V.368, A:L.370, A:A.378, A:Y.379, A:Y.379, A:P.383 Hydrogen bonds: A:Q.135, A:Q.135 Water bridges: A:Q.137

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: K.480, D.482 Ligands: YB.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.480 Water bridges: A:D.482

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.509 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.349, A:E.349 Water bridges: A:G.348, A:Q.506 IMD.6: 8 residues within 4Å: Chain A: S.289, L.290, S.497, H.498, N.501, N.532, E.534, I.535 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.289, A:S.497, A:N.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., Discovery of leukotriene A4 hydrolase inhibitors using metabolomics biased fragment crystallography. J.Med.Chem. (2009)

Release Date

2009-07-28

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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