SMTL ID : 3fvz.1

Structure of Peptidyl-alpha-hydroxyglycine alpha-Amidating Lyase (PAL)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.94, Y.163, H.199, H.295 Ligands: ACT.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.199, A:H.295

1 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: H.1, H.2, H.3, D.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.2, A:D.7, A:D.7

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: V.29, L.96, D.296 Ligands: GOL.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:V.29, A:L.96, A:D.296, H2O.50, H2O.52

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 8 residues within 4Å: Chain A: R.42, W.47, H.94, Y.163, H.199, M.293, H.295 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.47 Hydrogen bonds: A:Y.163 Water bridges: A:R.42 Salt bridges: A:R.42, A:H.94, A:H.199, A:H.295

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 13 residues within 4Å: Chain A: S.27, G.28, H.94, G.95, L.96, T.146, D.147, H.199, S.200, F.244, H.295, D.296 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.94, A:L.96, A:L.96, A:F.244 GOL.6: 2 residues within 4Å: Chain A: E.301, D.302 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chufan, E.E. et al., Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme. Structure (2009)

Release Date

2009-09-01

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-glycine alpha-amidating monooxygenase

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