SMTL ID : 3fw0.1

Structure of Peptidyl-alpha-hydroxyglycine alpha-Amidating Lyase (PAL) bound to alpha-hydroxyhippuric acid (non-peptidic substrate)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

2 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 5 residues within 4Å: Chain A: H.94, Y.163, H.199, H.295 Ligands: HH3.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.199, A:H.295 HG.2: 3 residues within 4Å: Chain A: H.1, H.4, D.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1, A:D.7, A:D.7

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: V.29, L.96, D.296 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:V.29, A:L.96, A:D.296, H2O.4, H2O.4

1 x HH3: (2S)-hydroxy[(phenylcarbonyl)amino]ethanoic acid(Non-covalent)

HH3.4: 9 residues within 4Å: Chain A: R.42, W.47, H.94, Y.163, H.199, R.215, M.293, H.295 Ligands: HG.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.47, A:Y.163 Hydrogen bonds: A:Y.163, A:R.215, A:R.215 Water bridges: A:W.47, A:H.311 Salt bridges: A:R.42, A:H.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chufan, E.E. et al., Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme. Structure (2009)

Release Date

2009-09-01

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-glycine alpha-amidating monooxygenase

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