SMTL ID : 3fyy.2 (1 other biounit)

Crystal structure of divergent enolase from Oceanobacillus iheyensis complexed with Mg

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-octamer

Ligands

16 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.193, A:E.221, A:H.246, H2O.7, H2O.7 MG.2: 3 residues within 4Å: Chain A: D.42, H.45, T.297 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.45, A:T.297, A:T.297, H2O.10, H2O.10 MG.3: 3 residues within 4Å: Chain B: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.193, B:E.221, B:H.246, H2O.12, H2O.21 MG.4: 3 residues within 4Å: Chain B: D.42, H.45, T.297 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.42, B:H.45, B:T.297, B:T.297, H2O.21 MG.5: 3 residues within 4Å: Chain C: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.193, C:E.221, C:H.246, H2O.29, H2O.29 MG.6: 3 residues within 4Å: Chain C: D.42, H.45, T.297 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.45, C:T.297, C:T.297, H2O.32, H2O.32 MG.7: 3 residues within 4Å: Chain D: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.193, D:E.221, D:H.246, H2O.35, H2O.43 MG.8: 3 residues within 4Å: Chain D: D.42, H.45, T.297 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.42, D:H.45, D:T.297, D:T.297, H2O.43 MG.9: 3 residues within 4Å: Chain E: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.193, E:E.221, E:H.246, H2O.51, H2O.51 MG.10: 3 residues within 4Å: Chain E: D.42, H.45, T.297 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.45, E:T.297, E:T.297, H2O.54, H2O.54 MG.11: 3 residues within 4Å: Chain F: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.193, F:E.221, F:H.246, H2O.57, H2O.65 MG.12: 3 residues within 4Å: Chain F: D.42, H.45, T.297 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.42, F:H.45, F:T.297, F:T.297, H2O.65 MG.13: 3 residues within 4Å: Chain G: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.193, G:E.221, G:H.246, H2O.73, H2O.74 MG.14: 3 residues within 4Å: Chain G: D.42, H.45, T.297 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.45, G:T.297, G:T.297, H2O.76, H2O.76 MG.15: 3 residues within 4Å: Chain H: D.193, E.221, H.246 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.193, H:E.221, H:H.246, H2O.79, H2O.87 MG.16: 3 residues within 4Å: Chain H: D.42, H.45, T.297 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.42, H:H.45, H:T.297, H:T.297, H2O.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rakus, J.F. et al., Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis . Biochemistry (2009)

Release Date

2009-02-03

Peptides

Muconate cycloisomerase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Muconate cycloisomerase

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