SMTL ID : 3g38.1

The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.04 Å

Oligo State

monomer

Ligands

1 x DC- DG- DC- DG- DC- DA- DG- DG: 5'-D(*CP*GP*CP*GP*CP*AP*GP*GP*C)-3'(Non-covalent)

DC-DG-DC-DG-DC-DA-DG-DG.1: 21 residues within 4Å: Chain A: N.12, G.13, L.14, R.15, A.16, R.19, K.20, K.40, Q.45, K.66, G.67, Y.208, R.209 Chain B: C.1, C.2, T.3, G.4, U.5, G.6, C.7, G.8 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.10, A:Y.68, A:Y.111, A:Y.111, A:N.114, A:N.151, A:N.153 Salt bridges: A:R.65, A:H.248

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: E.186 No protein-ligand interaction detected (PLIP) GOL.3: 3 residues within 4Å: Chain A: A.42, A.63, K.66 No protein-ligand interaction detected (PLIP) GOL.4: 2 residues within 4Å: Chain A: L.257, L.258 No protein-ligand interaction detected (PLIP) GOL.5: 5 residues within 4Å: Chain A: F.59, P.79, S.80, S.81, L.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.79 GOL.6: 2 residues within 4Å: Chain A: H.18, R.19 No protein-ligand interaction detected (PLIP) GOL.7: 4 residues within 4Å: Chain A: K.235, R.236, W.238, E.254 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.235, A:W.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakomek, K. et al., Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA. J.Mol.Biol. (2010)

Release Date

2010-03-09

Peptides

Exodeoxyribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exodeoxyribonuclease

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