SMTL ID : 3g3d.1

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-azido-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 5FU: 5-FLUORO-URIDINE-5'-MONOPHOSPHATE(Covalent)

5FU.1: 17 residues within 4Å: Chain A: S.89, D.91, K.113, H.115, D.144, K.146, M.203, S.204, P.249, Q.262, Y.264, V.281, G.282, R.283 Chain B: D.149, I.150, T.153 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.89, A:K.113, A:D.144, A:K.146, A:S.204, A:S.204, A:S.204, A:Q.262, A:Y.264, A:G.282, A:R.283, B:D.149, B:T.153 Water bridges: A:G.250, A:G.250, A:G.284 Salt bridges: A:R.283 5FU.3: 18 residues within 4Å: Chain A: D.149, I.150, T.153 Chain B: S.89, D.91, K.113, H.115, D.144, K.146, M.203, S.204, I.233, P.249, Q.262, Y.264, V.281, G.282, R.283 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.89, B:K.113, B:D.144, B:K.146, B:S.204, B:S.204, B:S.204, B:Q.262, B:G.282, B:R.283, A:D.149, A:T.153 Water bridges: B:G.250, B:G.250, B:G.284 Salt bridges: B:R.283

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: K.74, A.134, K.135, F.139, L.140, D.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.74, A:D.170 Water bridges: A:K.74, A:A.134, A:D.170 GOL.4: 2 residues within 4Å: Chain B: L.94, R.96 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.96 GOL.5: 4 residues within 4Å: Chain B: A.288, D.290, A.294, M.297 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.290 Water bridges: B:D.290

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain B: G.60, A.61, E.64 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.64 Water bridges: B:E.64, B:E.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bello, A.M. et al., Structure-activity relationships of orotidine-5'-monophosphate decarboxylase inhibitors as anticancer agents. J.Med.Chem. (2009)

Release Date

2009-03-03

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

Related Entries With Identical Sequence