- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 12 x PB2: 1-(biphenyl-4-ylmethyl)-1H-imidazole(Non-covalent)
PB2.2: 13 residues within 4Å:- Chain A: A.279, G.280, T.283, I.344, G.347, V.348, P.349
- Chain B: F.198, E.199, F.204, K.206
- Ligands: HEM.1, PB2.5
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:F.198, B:E.199, B:K.206, A:I.344, A:V.348, A:P.349
PB2.3: 7 residues within 4Å:- Chain A: L.51, R.54, E.368
- Chain B: I.82, F.204, L.205
- Ligands: PB2.5
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:I.82, B:F.204, A:L.51, A:R.54, A:R.54
PB2.5: 17 residues within 4Å:- Chain A: N.23, L.24, M.27, Y.50, L.51, F.346, P.349, F.370, V.458
- Chain B: L.205, K.206, F.208, P.209, G.210, T.211
- Ligands: PB2.2, PB2.3
9 PLIP interactions:2 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:F.208, B:T.211, A:L.51, A:L.51, A:F.346, A:P.349, A:F.370, A:F.370, A:V.458
PB2.6: 17 residues within 4Å:- Chain A: L.205, K.206, F.208, P.209, T.211
- Chain B: L.24, M.27, L.32, F.36, Y.50, L.51, F.346, P.349, F.370, V.458
- Ligands: PB2.8, PB2.9
12 PLIP interactions:9 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.32, B:F.36, B:L.51, B:F.346, B:P.349, B:F.370, B:F.370, B:V.458, A:F.208, A:F.208, A:T.211
- Water bridges: B:L.24
PB2.8: 12 residues within 4Å:- Chain A: F.198, E.199, F.204
- Chain B: A.279, G.280, T.283, I.344, G.347, V.348, P.349
- Ligands: PB2.6, HEM.7
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.198, A:E.199, B:I.344, B:I.344, B:V.348
PB2.9: 6 residues within 4Å:- Chain A: L.205
- Chain B: L.51, R.54, E.368, F.370
- Ligands: PB2.6
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- pi-Stacking: A:F.204
- Hydrophobic interactions: B:L.51, B:R.54, B:R.54, B:F.370
PB2.12: 13 residues within 4Å:- Chain C: A.279, G.280, T.283, I.344, G.347, V.348, P.349
- Chain D: S.195, F.198, E.199, S.202, F.204
- Ligands: HEM.11
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:F.198, D:F.198, D:E.199, C:I.344, C:V.348, C:P.349
PB2.13: 14 residues within 4Å:- Chain C: L.24, L.32, Y.50, L.51, F.346, F.370, V.458
- Chain D: L.205, K.206, F.208, P.209, G.210, T.211
- Ligands: PB2.14
9 PLIP interactions:7 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:L.32, C:L.51, C:L.51, C:F.346, C:F.370, C:V.458, D:F.208, D:T.211
- pi-Stacking: C:F.370
PB2.14: 5 residues within 4Å:- Chain C: R.54, E.368
- Chain D: F.204, L.205
- Ligands: PB2.13
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:R.54, C:R.54, D:F.204, D:L.205
- pi-Stacking: D:F.204
PB2.18: 13 residues within 4Å:- Chain C: F.198, E.199, F.204, K.206
- Chain D: A.279, G.280, T.283, I.344, G.347, V.348, P.349
- Ligands: HEM.17, PB2.19
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:F.198, C:F.198, C:E.199, C:K.206, D:I.344, D:V.348
PB2.19: 16 residues within 4Å:- Chain C: L.205, K.206, F.208, P.209, G.210, T.211
- Chain D: N.23, L.24, Y.50, L.51, F.346, P.349, F.370, V.458
- Ligands: PB2.18, PB2.20
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:F.208, C:T.211, D:F.346, D:P.349, D:F.370, D:V.458
PB2.20: 8 residues within 4Å:- Chain C: I.82, F.204, L.205
- Chain D: L.51, R.54, E.368, F.370
- Ligands: PB2.19
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:I.82, D:L.51, D:R.54, D:R.54, D:F.370
- pi-Stacking: C:F.204
- 4 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)
CM5.4: 10 residues within 4Å:- Chain A: R.79, I.95, N.98, G.99, W.102, L.269, T.272, V.273, R.415
- Chain B: V.20
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:N.98, A:W.102, A:L.269, A:T.272, A:V.273
- Hydrogen bonds: A:R.79
- Salt bridges: A:R.79
CM5.10: 9 residues within 4Å:- Chain A: V.20, F.201
- Chain B: R.79, I.95, N.98, R.101, L.269, T.272, V.273
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:N.98, B:L.269, B:T.272, B:V.273, A:V.20, A:F.201
- Hydrogen bonds: B:R.79
- Salt bridges: B:R.79
CM5.15: 9 residues within 4Å:- Chain C: S.77, R.79, I.95, N.98, G.99, W.102, L.269
- Chain D: V.20, F.201
10 PLIP interactions:2 interactions with chain D, 8 interactions with chain C- Hydrophobic interactions: D:V.20, D:F.201, C:N.98, C:W.102, C:W.102, C:L.269
- Hydrogen bonds: C:S.77, C:R.79, C:I.95, C:W.102
CM5.16: 8 residues within 4Å:- Chain C: V.20, F.201
- Chain D: R.79, N.98, W.102, L.269, T.272, R.415
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:N.98, D:W.102, D:L.269, D:T.272, C:V.20, C:F.201
- Hydrogen bonds: D:R.79
- Salt bridges: D:R.79
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gay, S.C. et al., Crystal structures of cytochrome P450 2B4 in complex with the inhibitor 1-biphenyl-4-methyl-1H-imidazole: ligand-induced structural response through alpha-helical repositioning. Biochemistry (2009)
- Release Date
- 2009-05-12
- Peptides
- Cytochrome P450 2B4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 12 x PB2: 1-(biphenyl-4-ylmethyl)-1H-imidazole(Non-covalent)
- 4 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gay, S.C. et al., Crystal structures of cytochrome P450 2B4 in complex with the inhibitor 1-biphenyl-4-methyl-1H-imidazole: ligand-induced structural response through alpha-helical repositioning. Biochemistry (2009)
- Release Date
- 2009-05-12
- Peptides
- Cytochrome P450 2B4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D