SMTL ID : 3g5s.1

Crystal structure of Thermus thermophilus TrmFO in complex with glutathione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: G.8, A.9, G.10, L.11, A.12, E.31, M.32, R.33, T.38, H.41, V.50, C.51, S.52, E.119, E.120, V.121, A.132, T.133, G.134, P.135, T.137, S.138, L.141, H.212, G.335, V.336, E.341, G.342, Y.343, S.346 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.50, A:P.135 Hydrogen bonds: A:L.11, A:A.12, A:R.33, A:R.33, A:S.52, A:V.121, A:V.121, A:S.138, A:V.336, A:G.342, A:Y.343, A:S.346 Water bridges: A:G.10, A:G.13, A:H.41, A:E.48, A:S.52, A:S.54, A:L.337, A:L.344 Salt bridges: A:H.41 pi-Stacking: A:Y.343

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 17 residues within 4Å: Chain A: A.155, Y.157, D.158, A.159, S.161, C.223, L.274, V.275, G.276, F.277, Q.278, Y.312, G.389, F.390, Q.391 Ligands: MG.3, EDO.5 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:A.159, A:A.159, A:S.161, A:G.276, A:F.277, A:Y.312, A:Q.391, A:Q.391 Water bridges: A:Y.157, A:Y.157, A:S.161, A:S.161

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: Q.391 Ligands: GSH.2 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.324, F.325, R.326, A.328, E.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.325, A:A.328 Water bridges: A:E.329 EDO.5: 8 residues within 4Å: Chain A: H.152, F.153, A.155, Y.312, N.314, G.389, F.390 Ligands: GSH.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.152, A:N.314, A:F.390 Water bridges: A:F.390, A:F.390 EDO.6: 7 residues within 4Å: Chain A: E.265, D.266, K.267, T.384, A.385, N.386, P.387 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.266 EDO.7: 5 residues within 4Å: Chain A: L.165, E.167, E.300, W.397, R.413 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.167, A:R.413 Water bridges: A:E.300, A:E.300 EDO.8: 3 residues within 4Å: Chain A: L.23, G.24, L.362 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishimasu, H. et al., Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-05-19

Peptides

Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO

Related Entries With Identical Sequence