SMTL ID : 3g8q.1 (1 other biounit)

A cytidine deaminase edits C-to-U in transfer RNAs in archaea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.44, E.46, C.67, C.70 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.44, A:C.67, A:C.70, H2O.1 ZN.3: 3 residues within 4Å: Chain B: H.44, C.67, C.70 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.44, B:C.67, B:C.70, H2O.3

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: L.123, L.124, T.125, R.189, R.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.125, A:T.125, A:R.191 NA.4: 3 residues within 4Å: Chain B: N.17, G.113, D.115 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.17 NA.5: 2 residues within 4Å: Chain B: E.176, E.179 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.176 NA.6: 1 residues within 4Å: Chain B: E.179 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.179, B:E.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Randau, L. et al., A cytidine deaminase edits C to U in transfer RNAs in Archaea. Science (2009)

Release Date

2009-05-26

Peptides

Predicted RNA-binding protein, contains THUMP domain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Predicted RNA-binding protein, contains THUMP domain

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