SMTL ID : 3g8q.2 (1 other biounit)

A cytidine deaminase edits C-to-U in transfer RNAs in archaea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.44, E.46, C.67, C.70 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.44, A:C.67, A:C.70 ZN.3: 4 residues within 4Å: Chain B: H.44, E.46, C.67, C.70 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.44, B:C.67, B:C.70

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: D.173, D.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.175 NA.4: 4 residues within 4Å: Chain B: L.120, D.265, R.270, S.272 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.265, B:R.270, B:S.272 NA.5: 3 residues within 4Å: Chain B: D.173, D.175, R.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.173, B:D.175, B:R.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Randau, L. et al., A cytidine deaminase edits C to U in transfer RNAs in Archaea. Science (2009)

Release Date

2009-05-26

Peptides

Predicted RNA-binding protein, contains THUMP domain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Predicted RNA-binding protein, contains THUMP domain

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