SMTL ID : 3g9j.1

GR DNA binding domain:Pal, 18bp complex-36

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: C.16, T.17 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain C: Y.39, L.40, P.58, A.59 Chain D: I.52, N.56 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:L.40, C:A.59, D:N.56 Water bridges: C:N.38 EDO.7: 2 residues within 4Å: Chain D: D.46, I.48 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.46 EDO.8: 7 residues within 4Å: Chain A: T.12, G.13 Chain D: S.24, V.27, F.28, R.31, R.61 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.24, D:R.31, D:R.61, D:R.61

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain C: C.5, C.8, C.22, C.25 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.5, C:C.8, C:C.22, C:C.25 ZN.3: 4 residues within 4Å: Chain C: C.41, C.47, C.57, C.60 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.41, C:C.47, C:C.57, C:C.60 ZN.5: 4 residues within 4Å: Chain D: C.5, C.8, C.22, C.25 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.5, D:C.8, D:C.22, D:C.25 ZN.6: 4 residues within 4Å: Chain D: C.41, C.47, C.57, C.60 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.41, D:C.47, D:C.57, D:C.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meijsing, S.H. et al., DNA binding site sequence directs glucocorticoid receptor structure and activity. Science (2009)

Release Date

2009-04-21

Peptides

Glucocorticoid receptor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Glucocorticoid receptor

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