SMTL ID : 3gac.2 (1 other biounit)

Structure of mif with HPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain B: S.53, N.54, E.55 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.54 Water bridges: B:R.49 SO4.2: 4 residues within 4Å: Chain B: G.67, N.69, N.72 Ligands: ACY.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.67, B:N.69, B:N.72 Water bridges: B:L.31 SO4.3: 3 residues within 4Å: Chain B: K.15, N.18, H.87 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.18 Water bridges: B:A.19 Salt bridges: B:K.15, B:H.87 SO4.6: 3 residues within 4Å: Chain A: Q.105 Chain C: N.69, R.70 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.70, A:Q.105 Salt bridges: C:R.70

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 3 residues within 4Å: Chain B: G.66, G.67 Ligands: SO4.2 No protein-ligand interaction detected (PLIP) ACY.7: 5 residues within 4Å: Chain B: R.93, Y.96 Chain C: A.36, Y.37, F.109 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:Y.37, C:F.109 Hydrogen bonds: C:A.36 Water bridges: B:R.93, B:R.93 Salt bridges: B:R.93

1 x ENO: 3-(4-HYDROXY-PHENYL)PYRUVIC ACID(Non-covalent)

ENO.5: 6 residues within 4Å: Chain B: P.1, K.33, Y.37, I.65, F.114, G.115 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.114 Water bridges: B:P.1, B:P.1, B:P.1, B:I.65, B:G.115 Salt bridges: B:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, D. et al., Structural and functional comparison of MIF ortholog from Plasmodium yoelii with MIF from its rodent host. Mol.Immunol. (2010)

Release Date

2009-12-29

Peptides

Macrophage migration inhibitory factor-like protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Macrophage migration inhibitory factor-like protein

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