- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
FE.2: 5 residues within 4Å:- Chain A: N.154, H.160, H.165, D.294
- Ligands: ACT.7
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.160, A:H.165, A:D.294, A:D.294
FE.9: 5 residues within 4Å:- Chain B: N.154, H.160, H.165, D.294
- Ligands: OXY.10
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.160, B:H.165, B:D.294, B:D.294
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 11 residues within 4Å:- Chain A: W.9, Y.10, V.11, W.110, K.224, V.225, S.226, A.227, I.252, L.253, T.254
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.11, A:K.224, A:V.225, A:S.226
EDO.4: 7 residues within 4Å:- Chain A: L.14, E.16, A.107, R.130, T.137, V.138, G.139
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.130
- Water bridges: A:G.140
EDO.5: 6 residues within 4Å:- Chain A: D.126, F.127, G.128, C.129, L.229, R.248
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:C.129
- Water bridges: A:G.128
EDO.12: 12 residues within 4Å:- Chain B: W.9, Y.10, V.11, W.110, K.224, V.225, S.226, A.227, I.252, L.253, T.254
- Ligands: EDO.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.11, B:V.225, B:S.226
EDO.13: 7 residues within 4Å:- Chain B: A.8, W.9, A.123, P.125, K.224, V.225
- Ligands: EDO.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.9, B:V.225
- Water bridges: B:A.123
EDO.14: 8 residues within 4Å:- Chain B: M.156, D.157, L.158, R.179, A.190, N.218, D.219, I.220
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:L.158, B:R.179, B:N.218, B:I.220
- Water bridges: B:M.156, B:R.179, B:C.320
EDO.16: 10 residues within 4Å:- Chain C: W.9, Y.10, V.11, K.224, V.225, S.226, A.227, I.252, L.253, T.254
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:V.11, C:K.224, C:V.225, C:S.226
EDO.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)EDO.18: 7 residues within 4Å:- Chain C: L.14, E.16, A.107, R.130, T.137, V.138, G.139
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.130
- Water bridges: C:G.140
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 7 residues within 4Å:- Chain A: N.230, I.232, G.249, H.251, W.285, L.290
- Ligands: ACT.7
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.232
- Hydrogen bonds: A:N.230, A:N.230
- Water bridges: A:G.266
- Salt bridges: A:H.251
ACT.7: 10 residues within 4Å:- Chain A: L.158, H.160, A.161, H.165, H.251, W.285, L.290, D.294
- Ligands: FE.2, ACT.6
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.158
- Salt bridges: A:H.160, A:H.165
ACT.11: 6 residues within 4Å:- Chain B: N.230, I.232, G.249, H.251, W.285, L.290
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.232
- Hydrogen bonds: B:N.230, B:W.285
- Salt bridges: B:H.251
ACT.19: 3 residues within 4Å:- Chain C: V.62, E.74, H.83
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:V.62
- Salt bridges: C:H.83
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dumitru, R. et al., Crystal structure of dicamba monooxygenase: a Rieske nonheme oxygenase that catalyzes oxidative demethylation. J.Mol.Biol. (2009)
- Release Date
- 2009-07-21
- Peptides
- DdmC: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dumitru, R. et al., Crystal structure of dicamba monooxygenase: a Rieske nonheme oxygenase that catalyzes oxidative demethylation. J.Mol.Biol. (2009)
- Release Date
- 2009-07-21
- Peptides
- DdmC: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C