SMTL ID : 3glc.2 (1 other biounit)

Crystal Structure of E. coli LsrF in complex with Ribose-5-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-10-mer

Ligands

10 x R5P: RIBOSE-5-PHOSPHATE(Non-covalent)

R5P.1: 13 residues within 4Å: Chain A: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.61, A:Y.64, A:R.111, A:K.207, A:G.230, A:G.231, A:G.231, A:D.255, A:G.257, A:R.258 Salt bridges: A:H.62, A:R.258 R5P.2: 13 residues within 4Å: Chain B: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.61, B:Y.64, B:R.111, B:K.207, B:G.230, B:G.231, B:G.231, B:D.255, B:G.257, B:R.258 Salt bridges: B:H.62, B:R.258 R5P.3: 13 residues within 4Å: Chain C: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:D.61, C:R.111, C:K.207, C:G.230, C:G.231, C:G.231, C:D.255, C:G.257, C:R.258 Salt bridges: C:H.62, C:R.258 R5P.4: 13 residues within 4Å: Chain D: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:D.61, D:R.111, D:K.207, D:G.230, D:G.231, D:G.231, D:D.255, D:G.257, D:R.258 Salt bridges: D:H.62, D:R.258 R5P.5: 13 residues within 4Å: Chain E: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:D.61, E:R.111, E:K.207, E:G.230, E:G.231, E:G.231, E:D.255, E:G.257, E:R.258 Salt bridges: E:H.62, E:R.258 R5P.6: 13 residues within 4Å: Chain F: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:D.61, F:Y.64, F:R.111, F:K.207, F:G.230, F:G.231, F:G.231, F:D.255, F:G.257, F:R.258 Salt bridges: F:H.62, F:R.258 R5P.7: 13 residues within 4Å: Chain G: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:D.61, G:R.111, G:K.207, G:G.230, G:G.231, G:G.231, G:D.255, G:G.257, G:R.258 Salt bridges: G:H.62, G:R.258 R5P.8: 13 residues within 4Å: Chain H: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain H Hydrogen bonds: H:D.61, H:R.111, H:K.207, H:G.230, H:G.231, H:G.231, H:D.255, H:G.257, H:R.258 Salt bridges: H:H.62, H:R.258 R5P.9: 13 residues within 4Å: Chain I: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain I Hydrogen bonds: I:D.61, I:R.111, I:K.207, I:G.230, I:G.231, I:G.231, I:D.255, I:G.257, I:R.258 Salt bridges: I:H.62, I:R.258 R5P.10: 13 residues within 4Å: Chain J: D.61, H.62, Y.64, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain J Hydrogen bonds: J:D.61, J:Y.64, J:R.111, J:K.207, J:G.230, J:G.231, J:G.231, J:D.255, J:G.257, J:R.258 Salt bridges: J:H.62, J:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz, Z. et al., The crystal structure of the Escherichia coli autoinducer-2 processing protein LsrF. Plos One (2009)

Release Date

2009-09-08

Peptides

Aldolase lsrF: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
P

G
Q

H
R

I
S

J
T

Aldolase lsrF

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