SMTL ID : 3glm.1

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with crotonyl-coA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: G.419, I.420, A.459, A.460, A.461 Chain C: V.217 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain B: G.419, I.420, A.459, A.460, A.461 Chain D: V.217 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: V.217 Chain C: G.419, I.420, A.459, A.460, A.461 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain B: V.217 Chain D: G.419, I.420, A.459, A.460, A.461 Ligand excluded by PLIP

4 x COO: CROTONYL COENZYME A(Non-covalent)

COO.2: 22 residues within 4Å: Chain A: T.51, R.59, M.118, A.119, A.121, S.151, G.152, V.153, E.154, F.155, Y.162, T.192, P.194, A.195, G.196 Chain C: A.459, A.460, Y.463, V.487, M.488, M.497, R.500 20 PLIP interactions: 14 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:A.119, A:V.153, A:Y.162, A:A.195, C:A.460, C:Y.463, C:V.487 Hydrogen bonds: A:T.51, A:S.151, A:S.151, A:V.153, A:V.153, A:F.155, A:G.196, C:M.497, C:R.500 Water bridges: A:G.219 Salt bridges: A:R.59, A:R.59, C:R.500 COO.4: 21 residues within 4Å: Chain B: T.51, R.59, M.118, A.119, S.151, G.152, V.153, E.154, F.155, Y.162, T.192, P.194, A.195, G.196 Chain D: A.459, A.460, Y.463, V.487, M.488, M.497, R.500 20 PLIP interactions: 14 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:A.119, B:V.153, B:Y.162, B:A.195, D:A.460, D:Y.463, D:V.487 Hydrogen bonds: B:S.151, B:S.151, B:V.153, B:V.153, B:F.155, B:G.196, D:M.497, D:R.500 Water bridges: B:G.221, B:G.221 Salt bridges: B:R.59, B:R.59, D:R.500 COO.6: 22 residues within 4Å: Chain A: A.459, A.460, Y.463, V.487, M.488, M.497, R.500 Chain C: T.51, R.59, M.118, A.119, A.121, S.151, G.152, V.153, E.154, F.155, Y.162, T.192, P.194, A.195, G.196 20 PLIP interactions: 14 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:A.119, C:V.153, C:Y.162, C:T.192, C:A.195, A:A.460, A:Y.463, A:V.487 Hydrogen bonds: C:S.151, C:S.151, C:V.153, C:V.153, C:F.155, C:G.196, A:M.497, A:R.500 Water bridges: C:G.219 Salt bridges: C:R.59, C:R.59, A:R.500 COO.8: 21 residues within 4Å: Chain B: A.459, A.460, Y.463, V.487, M.488, M.497, R.500 Chain D: T.51, R.59, M.118, A.119, S.151, G.152, V.153, E.154, F.155, Y.162, T.192, P.194, A.195, G.196 22 PLIP interactions: 16 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:A.119, D:V.153, D:Y.162, D:T.192, D:A.195, B:A.460, B:Y.463, B:V.487 Hydrogen bonds: D:T.51, D:S.151, D:S.151, D:V.153, D:V.153, D:F.155, D:G.196, B:M.497, B:R.500 Water bridges: D:G.221, D:G.221 Salt bridges: D:R.59, D:R.59, B:R.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kress, D. et al., An asymmetric model for Na+-translocating glutaconyl-CoA decarboxylases. J.Biol.Chem. (2009)

Release Date

2009-07-28

Peptides

Glutaconyl-CoA decarboxylase subunit A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glutaconyl-CoA decarboxylase subunit A

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