SMTL ID : 3gma.1

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with glutaryl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x GRA: glutaryl-coenzyme A(Non-covalent)

GRA.1: 21 residues within 4Å: Chain A: I.50, T.51, R.59, M.118, A.119, S.151, G.152, V.153, E.154, F.155, Y.162, T.192, P.194, A.195, G.196 Chain C: A.459, A.460, V.487, M.497, R.500, K.501 19 PLIP interactions: 12 interactions with chain A, 7 interactions with chain C Hydrophobic interactions: A:V.153, A:Y.162, A:T.192, A:A.195, C:V.487 Hydrogen bonds: A:T.51, A:S.151, A:S.151, A:V.153, A:V.153, A:F.155, A:G.196, C:A.460, C:R.500, C:K.501, C:K.501 Salt bridges: A:R.59, C:R.500, C:K.501 GRA.2: 19 residues within 4Å: Chain B: I.50, R.59, M.118, A.119, S.151, G.152, V.153, E.154, F.155, T.192, P.194, A.195, G.196 Chain D: A.459, A.460, V.487, M.488, M.497, R.500 16 PLIP interactions: 10 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:V.153, B:F.155, B:A.195, D:V.487 Hydrogen bonds: B:S.151, B:V.153, B:V.153, B:F.155, B:G.196, D:A.460, D:R.500 Water bridges: B:A.220, D:A.461, D:A.461 Salt bridges: B:R.59, D:R.500 GRA.3: 21 residues within 4Å: Chain A: A.459, A.460, V.487, M.497, R.500, K.501 Chain C: I.50, T.51, R.59, M.118, A.119, S.151, G.152, V.153, E.154, F.155, Y.162, T.192, P.194, A.195, G.196 18 PLIP interactions: 11 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:V.153, C:Y.162, C:T.192, C:A.195, A:V.487 Hydrogen bonds: C:S.151, C:S.151, C:V.153, C:V.153, C:F.155, C:G.196, A:A.460, A:R.500, A:K.501, A:K.501 Salt bridges: C:R.59, A:R.500, A:K.501 GRA.4: 19 residues within 4Å: Chain B: A.459, A.460, V.487, M.488, M.497, R.500 Chain D: I.50, R.59, M.118, A.119, S.151, G.152, V.153, E.154, F.155, T.192, P.194, A.195, G.196 16 PLIP interactions: 10 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:V.153, D:F.155, D:A.195, B:V.487 Hydrogen bonds: D:S.151, D:V.153, D:V.153, D:F.155, D:G.196, B:A.460, B:R.500 Water bridges: D:A.220, B:A.461, B:A.461 Salt bridges: D:R.59, B:R.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kress, D. et al., An asymmetric model for Na+-translocating glutaconyl-CoA decarboxylases. J.Biol.Chem. (2009)

Release Date

2009-07-28

Peptides

Glutaconyl-CoA decarboxylase subunit A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glutaconyl-CoA decarboxylase subunit A

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