SMTL ID : 3gno.1

Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 8 residues within 4Å: Chain A: Q.31, H.132, E.178, Y.321, W.366, E.394, W.444, F.460 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.132, A:E.178 Water bridges: A:E.178

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: D.58, Y.456, Y.467 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.401 Water bridges: A:D.58 GOL.3: 4 residues within 4Å: Chain A: P.351, I.365, W.366, Y.368 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.368 GOL.4: 7 residues within 4Å: Chain A: A.80, G.83, M.84, D.85, K.122, G.123, I.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.85, A:D.85 GOL.5: 3 residues within 4Å: Chain A: K.408, L.411, Y.474 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.408 Water bridges: A:K.408 GOL.6: 5 residues within 4Å: Chain A: G.167, D.168, K.171, T.239, Q.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.171, A:K.171 GOL.7: 8 residues within 4Å: Chain A: N.401, N.402, P.403, I.405, A.410, R.459, F.464, K.468 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.401, A:K.468, A:K.468 Water bridges: A:N.401, A:N.401, A:N.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seshadri, S. et al., Structural and enzymatic characterization of Os3BGlu6, a rice {beta}-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides. Plant Physiol. (2009)

Release Date

2009-07-21

Peptides

Os03g0212800 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Os03g0212800 protein

Related Entries With Identical Sequence