SMTL ID : 3gnp.1

Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase with Octyl-Beta-D-Thio-Glucoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SOG: octyl 1-thio-beta-D-glucopyranoside(Non-covalent)

SOG.1: 16 residues within 4Å: Chain A: Q.31, H.132, W.133, N.177, E.178, D.249, V.250, M.251, N.319, Y.321, W.366, E.394, W.444, E.451, W.452, F.460 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.249, A:Y.321, A:W.366, A:W.366 Hydrogen bonds: A:Q.31, A:H.132, A:N.177, A:E.178, A:N.319, A:Y.321, A:W.452

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.180, I.184, F.272, W.276, T.341, L.342 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.272, A:T.341 Water bridges: A:D.188, A:T.341 GOL.3: 10 residues within 4Å: Chain A: N.401, N.402, P.403, I.405, S.406, I.407, A.410, R.459, F.464, K.468 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.401, A:I.405, A:S.406, A:K.468 Water bridges: A:N.401, A:N.402 GOL.4: 6 residues within 4Å: Chain A: A.80, G.83, M.84, K.122, G.123, I.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.84 GOL.5: 5 residues within 4Å: Chain A: V.64, A.65, Y.456, Y.467, L.471 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.65 Water bridges: A:A.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seshadri, S. et al., Structural and enzymatic characterization of Os3BGlu6, a rice {beta}-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides. Plant Physiol. (2009)

Release Date

2009-07-21

Peptides

Os03g0212800 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Os03g0212800 protein

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