SMTL ID : 3gok.1 (16 other biounits)

Binding site mapping of protein ligands

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-12-mer

Ligands

12 x P4O: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,5,6,7-TETRAHYDRO-4H-PYRROLO[3,2-C]PYRIDIN-4-ONE(Non-covalent)

P4O.1: 16 residues within 4Å: Chain A: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, G.114, N.161, L.163, T.176, D.177 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.48, A:L.163 Hydrogen bonds: A:K.63, A:L.111, A:N.161, A:D.177, A:D.177 P4O.2: 15 residues within 4Å: Chain B: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.40, B:V.48, B:A.61, B:D.112, B:L.163 Hydrogen bonds: B:K.63, B:K.63, B:L.111, B:D.177 P4O.3: 16 residues within 4Å: Chain C: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, G.114, N.161, L.163, T.176, D.177 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.40, C:V.48, C:A.61, C:L.163 Hydrogen bonds: C:K.63, C:K.63, C:L.111 P4O.4: 15 residues within 4Å: Chain D: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.40, D:V.48, D:L.163 Hydrogen bonds: D:K.63, D:L.111, D:N.161, D:D.177 P4O.5: 15 residues within 4Å: Chain E: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:L.40, E:L.40, E:V.48, E:A.61, E:D.112, E:L.163 Hydrogen bonds: E:L.111, E:D.177 P4O.6: 15 residues within 4Å: Chain F: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:L.40, F:L.40, F:V.48, F:A.61, F:D.112, F:L.163 Hydrogen bonds: F:K.63, F:K.63, F:L.111, F:D.177 P4O.7: 15 residues within 4Å: Chain G: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 7 PLIP interactions: 7 interactions with chain G Hydrophobic interactions: G:V.48, G:L.111, G:L.163, G:T.176 Hydrogen bonds: G:K.63, G:K.63, G:L.111 P4O.8: 15 residues within 4Å: Chain H: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 8 PLIP interactions: 8 interactions with chain H Hydrophobic interactions: H:L.40, H:V.48, H:A.61, H:L.163 Hydrogen bonds: H:L.111, H:N.161, H:D.177, H:D.177 P4O.9: 16 residues within 4Å: Chain I: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, G.114, N.161, L.163, T.176, D.177 7 PLIP interactions: 7 interactions with chain I Hydrophobic interactions: I:L.40, I:V.48, I:L.163 Hydrogen bonds: I:K.63, I:K.63, I:L.111, I:D.177 P4O.10: 16 residues within 4Å: Chain J: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, G.114, N.161, L.163, T.176, D.177 7 PLIP interactions: 7 interactions with chain J Hydrophobic interactions: J:L.40, J:V.48, J:A.61, J:L.163 Hydrogen bonds: J:K.63, J:K.63, J:L.111 P4O.11: 16 residues within 4Å: Chain K: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, G.114, N.161, L.163, T.176, D.177 9 PLIP interactions: 9 interactions with chain K Hydrophobic interactions: K:V.48, K:L.111, K:L.163, K:T.176 Hydrogen bonds: K:K.63, K:K.63, K:L.111, K:N.161, K:D.177 P4O.12: 15 residues within 4Å: Chain L: L.40, L.42, G.43, V.48, A.61, K.63, M.108, E.109, C.110, L.111, D.112, N.161, L.163, T.176, D.177 6 PLIP interactions: 6 interactions with chain L Hydrophobic interactions: L:V.48, L:L.163 Hydrogen bonds: L:K.63, L:L.111, L:D.177, L:D.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheich, C. et al., Binding site mapping of protein ligands. To be published

Release Date

2010-03-02

Peptides

MAP kinase-activated protein kinase 2: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

MAP kinase-activated protein kinase 2

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