SMTL ID : 3grv.1

Crystal Structure of the Complex between Adenosine and Methanocaldococcus jannaschi Dim1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ADN: ADENOSINE(Non-covalent)

ADN.1: 14 residues within 4Å: Chain A: C.31, G.58, G.60, I.78, E.79, I.80, D.81, L.84, G.103, D.104, A.105, N.121, P.123, I.126 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:C.31, A:L.59, A:G.60, A:I.80, A:D.104, A:D.104, A:A.105 Water bridges: A:D.81, A:N.121

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.165, R.220 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.165 Salt bridges: A:R.165 SO4.3: 4 residues within 4Å: Chain A: P.202, N.203, K.204, G.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.204, A:G.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Farrell, H.C. et al., Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry (2010)

Release Date

2010-03-31

Peptides

Dimethyladenosine transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dimethyladenosine transferase

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