SMTL ID : 3gry.1

Crystal Structure of the complex between S-Adenosyl Methionine and Methanocaldococcus jannaschi Dim1.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: C.31, L.33, E.56, G.58, L.59, G.60, K.61, I.78, E.79, I.80, D.81, L.84, G.103, D.104, A.105, N.121, L.122, P.123 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.33, A:G.58, A:G.60, A:K.61, A:I.80, A:D.104, A:D.104, A:A.105, A:N.121 Water bridges: A:N.121

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: S.128, R.153, R.165, L.166 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.128, A:S.128 Water bridges: A:R.153, A:R.153, A:L.166 Salt bridges: A:R.153, A:R.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Farrell, H.C. et al., Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry (2010)

Release Date

2010-03-31

Peptides

Dimethyladenosine transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dimethyladenosine transferase

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