SMTL ID : 3gye.1

Didydroorotate dehydrogenase from Leishmania major

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 23 residues within 4Å: Chain A: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:V.56, A:Y.93, A:Y.93 Hydrogen bonds: A:A.54, A:S.79, A:S.79, A:S.79, A:N.162, A:K.199, A:K.199, A:N.229, A:G.257, A:G.285, A:G.306, A:T.307, A:T.307 Water bridges: A:A.54, A:K.78, A:G.284, A:V.286, A:V.286, A:V.286 FMN.3: 23 residues within 4Å: Chain B: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.56, B:Y.93, B:Y.93 Hydrogen bonds: B:A.54, B:S.79, B:S.79, B:S.79, B:N.162, B:K.199, B:K.199, B:N.229, B:G.257, B:G.285, B:G.306, B:T.307 Water bridges: B:K.78, B:G.284, B:G.284, B:V.286, B:V.286

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: V.236, I.237 Chain B: L.261, L.265, L.294 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:D.291, A:Y.259, A:Y.259 Hydrogen bonds: A:I.237 GOL.4: 5 residues within 4Å: Chain A: L.261, L.265, L.294 Chain B: V.236, I.237 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.237 Water bridges: B:Y.259, A:D.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cordeiro, A.T. et al., Crystal Structure of Leishmania major Dihydroorotate dehydrogenase. To be Published

Release Date

2010-04-07

Peptides

Dihydroorotate dehydrogenase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydroorotate dehydrogenase, putative

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