SMTL ID : 3gz3.1

Leishmania major Dihydroorotate Dehydrogenase in complex with orotate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307 Ligands: ORO.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:V.56, A:Y.93, A:Y.93 Hydrogen bonds: A:A.54, A:S.79, A:S.79, A:S.79, A:K.199, A:K.199, A:N.229, A:G.257, A:G.284, A:G.285, A:G.306, A:T.307, A:T.307 Water bridges: A:A.54, A:K.78, A:G.284, A:V.286, A:V.286, A:V.286 FMN.5: 25 residues within 4Å: Chain B: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, S.100, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307 Ligands: ORO.6 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.56, B:Y.93, B:Y.93 Hydrogen bonds: B:A.54, B:S.79, B:S.79, B:S.79, B:N.162, B:K.199, B:K.199, B:N.229, B:G.257, B:G.285, B:G.306, B:T.307 Water bridges: B:K.78, B:G.284, B:G.284, B:V.286, B:V.286

2 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 10 residues within 4Å: Chain A: K.78, N.102, S.103, M.104, G.105, L.106, N.162, N.229, S.230 Ligands: FMN.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.102, A:N.102, A:N.102, A:M.104, A:G.105, A:L.106, A:N.162, A:N.229, A:N.229, A:S.230 Water bridges: A:G.254 Salt bridges: A:K.78 ORO.6: 9 residues within 4Å: Chain B: K.78, N.102, M.104, G.105, L.106, N.162, N.229, S.230 Ligands: FMN.5 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.102, B:N.102, B:N.102, B:M.104, B:G.105, B:L.106, B:N.162, B:N.229, B:N.229, B:S.230 Water bridges: B:G.254 Salt bridges: B:K.78

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: V.236, I.237 Chain B: L.261, L.265, L.294 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:D.291, A:Y.259 Hydrogen bonds: A:I.237 GOL.4: 3 residues within 4Å: Chain A: P.97, R.258, Y.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.97 Water bridges: A:Y.287, A:D.291 GOL.7: 5 residues within 4Å: Chain A: L.261, L.265, L.294 Chain B: V.236, I.237 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.291, B:Y.259 Hydrogen bonds: B:I.237 GOL.8: 4 residues within 4Å: Chain B: P.97, G.99, R.258, Y.287 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cordeiro, A.T. et al., Leismania major dihydroorotate in complex with orotate. To be Published

Release Date

2010-04-28

Peptides

Dihydroorotate dehydrogenase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydroorotate dehydrogenase, putative

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