- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.53 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 6 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 10 x UNL: UNKNOWN LIGAND(Non-covalent)(Non-functional Binders)
UNL.2: 1 residues within 4Å:- Chain B: S.84
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.84, B:S.84
UNL.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)UNL.11: 1 residues within 4Å:- Chain C: N.149
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.149
UNL.12: 2 residues within 4Å:- Chain C: T.199, H.202
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.199, C:H.202
UNL.18: 1 residues within 4Å:- Chain E: Y.178
No protein-ligand interaction detected (PLIP)UNL.19: 2 residues within 4Å:- Chain E: T.140
- Chain M: N.149
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:T.140
UNL.23: 1 residues within 4Å:- Chain M: T.199
1 PLIP interactions:1 interactions with chain M- Hydrogen bonds: M:H.202
UNL.29: 2 residues within 4Å:- Chain M: A.85
- Ligands: HEM.21
1 PLIP interactions:1 interactions with chain M- Hydrogen bonds: M:A.85
UNL.31: 3 residues within 4Å:- Chain M: N.149, H.159, W.166
2 PLIP interactions:2 interactions with chain M- Hydrogen bonds: M:N.149, M:H.159
UNL.35: 3 residues within 4Å:- Chain C: N.149
- Chain O: T.140, H.141
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:H.141
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.3: 21 residues within 4Å:- Chain C: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, R.81, H.84, A.85, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, F.180, H.183, F.184, P.187
20 PLIP interactions:20 interactions with chain C,- Hydrophobic interactions: C:Q.45, C:I.46, C:L.52, C:L.52, C:A.53, C:Y.56, C:L.124, C:T.127, C:A.128, C:L.134, C:F.180, C:F.184, C:P.187
- Salt bridges: C:R.81, C:R.81
- pi-Stacking: C:H.84, C:H.183, C:H.183
- Metal complexes: C:H.84, C:H.183
HEM.4: 23 residues within 4Å:- Chain C: W.32, G.35, S.36, L.38, A.39, H.98, R.101, S.107, Y.110, T.113, W.114, G.117, V.118, L.120, L.121, I.190, T.194, H.197, L.198, L.201, S.206, N.207
- Ligands: ANY.6
22 PLIP interactions:22 interactions with chain C,- Hydrophobic interactions: C:L.38, C:L.38, C:Y.110, C:T.113, C:W.114, C:V.118, C:L.120, C:L.120, C:L.121, C:I.190, C:L.198, C:L.201, C:L.201
- Hydrogen bonds: C:G.35, C:N.207
- Salt bridges: C:H.98, C:R.101, C:R.101
- pi-Stacking: C:H.98, C:H.197
- Metal complexes: C:H.98, C:H.197
HEM.21: 21 residues within 4Å:- Chain M: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, R.81, H.84, A.85, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, H.183, F.184, P.187
- Ligands: UNL.29
17 PLIP interactions:17 interactions with chain M,- Hydrophobic interactions: M:Q.45, M:I.46, M:L.52, M:L.52, M:Y.56, M:Y.56, M:L.124, M:T.127, M:A.128, M:L.134, M:F.184
- Salt bridges: M:R.81, M:R.81
- pi-Stacking: M:H.84, M:H.183
- Metal complexes: M:H.84, M:H.183
HEM.22: 24 residues within 4Å:- Chain M: W.32, G.35, S.36, L.38, A.39, I.95, H.98, R.101, S.107, Y.110, T.113, W.114, G.117, V.118, L.120, L.121, I.190, T.194, H.197, L.198, L.201, S.206, N.207
- Ligands: ANY.25
22 PLIP interactions:22 interactions with chain M,- Hydrophobic interactions: M:L.38, M:L.38, M:I.95, M:Y.110, M:T.113, M:W.114, M:V.118, M:L.120, M:L.120, M:L.121, M:I.190, M:L.198, M:L.201, M:L.201
- Hydrogen bonds: M:G.35, M:N.207
- Salt bridges: M:H.98, M:R.101, M:R.101
- pi-Stacking: M:H.98
- Metal complexes: M:H.98, M:H.197
- 2 x SMA: STIGMATELLIN A(Non-covalent)
SMA.5: 21 residues within 4Å:- Chain C: L.122, M.125, A.126, F.129, G.143, V.146, I.147, T.148, F.151, F.179, L.182, I.269, K.270, P.271, E.272, F.275, A.278, Y.279, L.295
- Chain O: C.160, H.161
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:F.129, C:F.129, C:T.148, C:F.151, C:F.179, C:L.182, C:P.271, C:F.275, C:F.275, C:F.275, C:A.278, C:L.295
- Hydrogen bonds: C:E.272
SMA.24: 22 residues within 4Å:- Chain E: C.160, H.161
- Chain M: L.122, M.125, A.126, F.129, V.130, G.143, V.146, I.147, T.148, F.151, F.179, L.182, I.269, K.270, P.271, E.272, F.275, A.278, Y.279, L.295
14 PLIP interactions:14 interactions with chain M- Hydrophobic interactions: M:F.129, M:F.129, M:V.130, M:T.148, M:F.151, M:F.179, M:L.182, M:F.275, M:F.275, M:F.275, M:A.278, M:L.295
- Hydrogen bonds: M:E.272, M:E.272
- 2 x ANY: 2-METHYL-BUTYRIC ACID 3-(3-FORMYLAMINO-2-HYDROXY-BENZOYLAMINO)-8-HEPTYL-2,6-DIMETHYL-4,9-DIOXO-[1,5]DIOXONAN-7-YL ESTER(Non-covalent)
ANY.6: 17 residues within 4Å:- Chain C: S.18, L.19, I.28, W.32, N.33, G.35, S.36, A.39, L.42, T.194, I.195, L.198, S.206, F.221, Y.225, D.229
- Ligands: HEM.4
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:L.19, C:L.19, C:I.28, C:A.39, C:L.42, C:T.194, C:I.195
- Hydrogen bonds: C:S.36, C:D.229, C:D.229
- pi-Stacking: C:F.221
ANY.25: 18 residues within 4Å:- Chain M: S.18, L.19, L.22, I.28, W.32, N.33, G.35, S.36, A.39, L.42, T.194, I.195, L.198, S.206, F.221, Y.225, D.229
- Ligands: HEM.22
11 PLIP interactions:11 interactions with chain M- Hydrophobic interactions: M:L.19, M:L.19, M:I.28, M:A.39, M:L.42, M:T.194, M:I.195, M:F.221
- Hydrogen bonds: M:S.36, M:D.229, M:D.229
- 4 x CDL: CARDIOLIPIN(Non-covalent)
CDL.7: 11 residues within 4Å:- Chain C: S.29, A.30, W.31, F.34, Y.105
- Chain F: H.72
- Chain G: R.40, F.41, Q.44
- Ligands: PEE.8, CDL.14
8 PLIP interactions:4 interactions with chain C, 1 interactions with chain F, 3 interactions with chain G- Hydrophobic interactions: C:W.31, C:W.31, C:F.34
- Hydrogen bonds: C:A.30, G:R.40
- Salt bridges: F:H.72, G:R.40, G:R.40
CDL.14: 15 residues within 4Å:- Chain C: A.30, N.33, L.231, G.232, L.235, M.236
- Chain D: Y.220, K.223, R.224
- Chain F: H.72, R.73
- Chain G: A.33, L.34, R.40
- Ligands: CDL.7
9 PLIP interactions:4 interactions with chain C, 2 interactions with chain G, 2 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: C:L.235, C:M.236
- Hydrogen bonds: C:N.33, G:R.40
- Salt bridges: C:K.228, G:R.40, D:K.223, D:R.224, F:R.73
CDL.26: 11 residues within 4Å:- Chain M: S.29, A.30, W.31, Y.105
- Chain P: H.72
- Chain Q: V.37, R.40, F.41, Q.44
- Ligands: PEE.28, CDL.33
9 PLIP interactions:4 interactions with chain M, 1 interactions with chain P, 4 interactions with chain Q- Hydrophobic interactions: M:W.31, M:W.31, Q:V.37
- Hydrogen bonds: M:A.30, M:Y.105, Q:R.40
- Salt bridges: P:H.72, Q:R.40, Q:R.40
CDL.33: 17 residues within 4Å:- Chain M: A.30, N.33, L.231, G.232, L.235, M.236
- Chain N: Y.220, K.223, R.224, K.231
- Chain P: H.72, R.73
- Chain Q: I.29, A.33, L.34, R.40
- Ligands: CDL.26
12 PLIP interactions:5 interactions with chain M, 4 interactions with chain N, 2 interactions with chain Q, 1 interactions with chain P- Hydrophobic interactions: M:A.30, M:L.235, M:M.236, N:Y.220
- Hydrogen bonds: M:N.33, N:Y.220, Q:R.40
- Salt bridges: M:K.228, N:K.223, N:R.224, Q:R.40, P:R.73
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 6 residues within 4Å:- Chain C: F.64, A.68, R.81, N.256, F.257
- Chain D: Y.115
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:Y.115, C:R.81, C:R.81, C:N.256, C:N.256
GOL.30: 4 residues within 4Å:- Chain M: F.64, R.81, N.256
- Chain N: Y.115
4 PLIP interactions:3 interactions with chain M, 1 interactions with chain N- Hydrogen bonds: M:R.81, M:R.81, M:N.256, N:Y.115
- 2 x HEC: HEME C(Covalent)
HEC.13: 19 residues within 4Å:- Chain D: V.32, V.36, C.37, C.40, H.41, N.105, A.108, P.110, P.111, L.113, R.120, Y.126, L.131, F.153, I.158, G.159, M.160, P.163, V.186
13 PLIP interactions:13 interactions with chain D,- Hydrophobic interactions: D:V.32, D:A.108, D:P.110, D:L.113, D:L.131, D:L.131, D:I.158, D:M.160, D:P.163
- Hydrogen bonds: D:G.159
- Salt bridges: D:R.120
- pi-Stacking: D:H.41
- Metal complexes: D:H.41
HEC.32: 20 residues within 4Å:- Chain N: V.32, V.36, C.37, C.40, H.41, N.105, A.108, P.110, P.111, L.113, R.120, Y.126, V.127, L.131, F.153, I.158, G.159, M.160, P.163, V.186
14 PLIP interactions:14 interactions with chain N,- Hydrophobic interactions: N:V.32, N:A.108, N:P.110, N:V.127, N:L.131, N:I.158, N:M.160, N:P.163
- Hydrogen bonds: N:Y.126, N:G.159
- Salt bridges: N:R.120
- pi-Stacking: N:H.41, N:H.41
- Metal complexes: N:H.41
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.15: 8 residues within 4Å:- Chain E: C.139, H.141, L.142, C.144, C.158, C.160, H.161, S.163
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.139, E:H.141, E:C.158, E:H.161
FES.34: 10 residues within 4Å:- Chain O: C.139, H.141, L.142, G.143, C.144, C.158, C.160, H.161, G.162, S.163
4 PLIP interactions:4 interactions with chain O,- Metal complexes: O:C.139, O:H.141, O:C.158, O:H.161
- 2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.17: 16 residues within 4Å:- Chain C: T.44, Y.76, L.79, L.241
- Chain D: Q.200, M.204, K.207, M.208, I.211, S.212
- Chain E: Y.49, A.50, N.53, V.54, Q.57
- Chain J: D.33
9 PLIP interactions:2 interactions with chain D, 5 interactions with chain E, 2 interactions with chain C- Hydrophobic interactions: D:I.211, E:A.50, E:V.54, C:T.44, C:L.241
- Salt bridges: D:K.207
- Hydrogen bonds: E:Y.49, E:N.53, E:Q.57
PLC.36: 14 residues within 4Å:- Chain M: T.44, Y.76, L.79, L.241
- Chain N: Q.200, M.204, K.207, M.208
- Chain O: Y.49, A.50, N.53, V.54, Q.57
- Chain T: D.33
9 PLIP interactions:5 interactions with chain O, 3 interactions with chain M, 1 interactions with chain N- Hydrophobic interactions: O:A.50, O:V.54, M:T.44, M:L.241, M:L.241
- Hydrogen bonds: O:N.53, O:N.53, O:Q.57
- Salt bridges: N:K.207
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron Transfer by Domain Movement in Cytochrome Bc1. Nature (1998)
- Release Date
- 2009-04-28
- Peptides
- UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL: AK
UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, MITOCHONDRIAL: BL
Cytochrome b: CM
CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN: FP
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: GQ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
NB
BL
OC
CM
PD
DN
QE
EO
RF
FP
SG
GQ
TH
HR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.53 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 6 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 10 x UNL: UNKNOWN LIGAND(Non-covalent)(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x SMA: STIGMATELLIN A(Non-covalent)
- 2 x ANY: 2-METHYL-BUTYRIC ACID 3-(3-FORMYLAMINO-2-HYDROXY-BENZOYLAMINO)-8-HEPTYL-2,6-DIMETHYL-4,9-DIOXO-[1,5]DIOXONAN-7-YL ESTER(Non-covalent)
- 4 x CDL: CARDIOLIPIN(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x HEC: HEME C(Covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron Transfer by Domain Movement in Cytochrome Bc1. Nature (1998)
- Release Date
- 2009-04-28
- Peptides
- UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL: AK
UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, MITOCHONDRIAL: BL
Cytochrome b: CM
CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN: FP
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: GQ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
NB
BL
OC
CM
PD
DN
QE
EO
RF
FP
SG
GQ
TH
HR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.