- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 10 x UNL: UNKNOWN LIGAND(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 23 residues within 4Å:- Chain C: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, R.81, H.84, A.85, A.88, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, H.183, F.184, P.187, I.190, Y.274
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:Q.45, C:L.50, C:L.52, C:A.53, C:Y.56, C:A.88, C:L.124, C:T.127, C:L.134, C:L.134, C:F.184, C:P.187, C:I.190
- Salt bridges: C:R.81, C:R.81
- pi-Stacking: C:H.183
- Metal complexes: C:H.84, C:H.183
HEM.3: 23 residues within 4Å:- Chain C: W.32, G.35, S.36, L.38, A.39, H.98, I.99, R.101, S.107, T.113, W.114, G.117, V.118, L.120, L.121, I.190, T.194, H.197, L.198, L.201, S.206, N.207
- Ligands: UQ.5
23 PLIP interactions:23 interactions with chain C,- Hydrophobic interactions: C:L.38, C:L.38, C:I.99, C:T.113, C:W.114, C:V.118, C:L.120, C:L.121, C:I.190, C:L.198, C:L.201, C:L.201
- Hydrogen bonds: C:G.35, C:N.207
- Water bridges: C:W.32, C:F.34, C:S.206
- Salt bridges: C:H.98, C:R.101, C:R.101
- pi-Stacking: C:H.98
- Metal complexes: C:H.98, C:H.197
HEM.21: 23 residues within 4Å:- Chain M: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, R.81, H.84, A.85, A.88, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, H.183, F.184, P.187, I.190, Y.274
17 PLIP interactions:17 interactions with chain M,- Hydrophobic interactions: M:Q.45, M:L.50, M:L.52, M:A.53, M:Y.56, M:A.88, M:L.124, M:T.127, M:L.134, M:L.134, M:F.184, M:P.187, M:I.190
- Salt bridges: M:R.81, M:R.81
- Metal complexes: M:H.84, M:H.183
HEM.22: 24 residues within 4Å:- Chain M: W.32, G.35, S.36, L.38, A.39, I.95, H.98, I.99, R.101, S.107, T.113, W.114, G.117, V.118, L.120, L.121, I.190, T.194, H.197, L.198, L.201, S.206, N.207
- Ligands: UQ.25
24 PLIP interactions:24 interactions with chain M,- Hydrophobic interactions: M:L.38, M:L.38, M:I.95, M:I.99, M:T.113, M:W.114, M:V.118, M:L.120, M:L.120, M:L.121, M:I.190, M:L.198, M:L.201, M:L.201
- Hydrogen bonds: M:G.35, M:N.207
- Water bridges: M:W.32, M:S.206
- Salt bridges: M:H.98, M:R.101, M:R.101
- pi-Stacking: M:H.98
- Metal complexes: M:H.98, M:H.197
- 2 x SMA: STIGMATELLIN A(Non-covalent)
SMA.4: 20 residues within 4Å:- Chain C: L.122, M.125, A.126, F.129, G.143, V.146, I.147, T.148, F.151, F.179, L.182, K.270, P.271, E.272, F.275, A.278, Y.279, L.295
- Chain O: C.160, H.161
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:F.129, C:F.129, C:F.129, C:T.148, C:F.151, C:F.179, C:L.182, C:F.275, C:F.275, C:A.278, C:L.295
- Hydrogen bonds: C:E.272
SMA.24: 20 residues within 4Å:- Chain E: C.160, H.161
- Chain M: L.122, M.125, A.126, F.129, G.143, V.146, I.147, T.148, F.151, F.179, L.182, K.270, P.271, E.272, F.275, A.278, Y.279, L.295
13 PLIP interactions:13 interactions with chain M- Hydrophobic interactions: M:F.129, M:F.129, M:F.129, M:T.148, M:F.151, M:F.179, M:L.182, M:F.275, M:F.275, M:A.278, M:L.295
- Hydrogen bonds: M:E.272, M:E.272
- 2 x UQ: Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer(Non-covalent)
UQ.5: 10 residues within 4Å:- Chain C: L.22, I.28, A.39, L.198, L.201, H.202, S.206, F.221, D.229
- Ligands: HEM.3
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:A.39, C:L.198, C:F.221
- Hydrogen bonds: C:S.206
UQ.25: 14 residues within 4Å:- Chain M: S.18, L.19, L.22, A.24, I.28, S.36, A.39, L.198, H.202, S.206, F.221, Y.225, D.229
- Ligands: HEM.22
3 PLIP interactions:3 interactions with chain M- Hydrophobic interactions: M:L.19, M:A.39
- pi-Stacking: M:F.221
- 6 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.6: 17 residues within 4Å:- Chain C: W.31, F.96, L.97, R.101, Y.104, Y.105, F.277, T.317, F.326, W.327, L.333, T.337, Y.359
- Chain F: Y.29
- Chain G: Q.44, V.48
- Ligands: CDL.19
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:W.31, C:W.31, C:F.96, C:F.96, C:F.96, C:L.97, C:Y.104, C:Y.104, C:Y.105, C:F.277, C:F.326, C:W.327, C:L.333
- Hydrogen bonds: C:Y.104, C:Y.104, C:Y.105
PEE.7: 4 residues within 4Å:- Chain A: S.439, Y.442
- Chain C: H.222
- Ligands: PEE.15
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:S.439
- Salt bridges: C:H.222, C:H.222
PEE.15: 21 residues within 4Å:- Chain A: Y.442
- Chain C: F.227, I.230, T.234
- Chain D: M.222
- Chain E: Y.37, T.40, C.44, T.47, A.50, A.51, K.52
- Chain J: F.11, R.12, F.17, A.18, V.22, A.25, V.26, E.29
- Ligands: PEE.7
12 PLIP interactions:4 interactions with chain E, 6 interactions with chain J, 2 interactions with chain C- Hydrophobic interactions: E:T.47, E:A.50, E:K.52, J:F.17, J:F.17, J:A.18, J:A.25, J:V.26, C:I.230, C:T.234
- Hydrogen bonds: E:T.40, J:F.11
PEE.20: 3 residues within 4Å:- Chain K: Y.442
- Chain M: H.222
- Ligands: PEE.34
4 PLIP interactions:1 interactions with chain M, 3 interactions with chain K- Salt bridges: M:H.222
- Hydrogen bonds: K:S.439, K:Y.442, K:Y.442
PEE.27: 17 residues within 4Å:- Chain M: W.31, F.96, L.97, R.101, Y.104, Y.105, F.277, T.317, F.326, W.327, L.333, T.337, Y.359
- Chain P: Y.29
- Chain Q: Q.44, V.48
- Ligands: CDL.26
15 PLIP interactions:14 interactions with chain M, 1 interactions with chain P- Hydrophobic interactions: M:W.31, M:W.31, M:F.96, M:F.96, M:L.97, M:Y.104, M:Y.104, M:Y.105, M:F.277, M:F.277, M:F.326, M:W.327, M:L.333
- Hydrogen bonds: M:Y.104, P:Y.29
PEE.34: 23 residues within 4Å:- Chain K: Y.442
- Chain M: F.227, I.230, T.234
- Chain N: M.222
- Chain O: Y.37, T.40, C.44, T.47, A.50, A.51, K.52, V.54
- Chain T: F.11, R.12, T.14, F.17, A.18, V.22, A.25, V.26, E.29
- Ligands: PEE.20
13 PLIP interactions:5 interactions with chain T, 1 interactions with chain K, 6 interactions with chain O, 1 interactions with chain M- Hydrophobic interactions: T:F.17, T:F.17, T:A.18, T:A.25, O:T.47, O:A.50, O:K.52, O:V.54, M:T.234
- Hydrogen bonds: T:F.11, K:Y.442, O:T.40, O:T.40
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 7 residues within 4Å:- Chain C: F.64, V.67, A.68, R.81, N.256, F.257
- Chain D: Y.115
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:Y.115, C:R.81, C:R.81, C:N.256
GOL.29: 6 residues within 4Å:- Chain M: F.64, R.81, P.135, N.256, F.257
- Chain N: Y.115
3 PLIP interactions:3 interactions with chain M- Hydrogen bonds: M:R.81, M:R.81, M:N.256
- 2 x HEC: HEME C(Covalent)
HEC.12: 22 residues within 4Å:- Chain D: V.32, V.36, C.37, C.40, H.41, N.105, A.108, L.109, P.110, P.111, I.116, R.120, Y.126, L.130, F.153, I.158, G.159, M.160, P.163, I.164, V.186, L.190
14 PLIP interactions:14 interactions with chain D,- Hydrophobic interactions: D:V.32, D:A.108, D:I.116, D:L.130, D:I.158, D:M.160, D:P.163, D:I.164, D:V.186, D:L.190
- Hydrogen bonds: D:G.159
- Salt bridges: D:R.120
- pi-Stacking: D:H.41
- Metal complexes: D:H.41
HEC.31: 22 residues within 4Å:- Chain N: V.32, V.36, C.37, C.40, H.41, N.105, A.108, L.109, P.110, P.111, I.116, R.120, Y.126, L.130, F.153, I.158, G.159, M.160, P.163, I.164, V.186, L.190
15 PLIP interactions:15 interactions with chain N,- Hydrophobic interactions: N:V.32, N:A.108, N:I.116, N:L.130, N:I.158, N:M.160, N:P.163, N:I.164, N:V.186, N:L.190
- Hydrogen bonds: N:Y.126, N:G.159
- Salt bridges: N:R.120
- pi-Stacking: N:H.41
- Metal complexes: N:H.41
- 4 x CDL: CARDIOLIPIN(Non-covalent)
CDL.13: 16 residues within 4Å:- Chain C: A.30, N.33, K.228, G.232, L.235, M.236
- Chain D: Y.220, K.223, R.224, K.231
- Chain F: H.72, R.73
- Chain G: I.29, L.34, R.40
- Ligands: CDL.19
9 PLIP interactions:1 interactions with chain G, 4 interactions with chain C, 3 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: G:R.40
- Hydrophobic interactions: C:A.30, C:L.235, C:M.236
- Salt bridges: C:K.228, D:K.223, D:R.224, D:K.231, F:R.73
CDL.19: 11 residues within 4Å:- Chain C: S.29, A.30, W.31, Y.105
- Chain F: H.72
- Chain G: V.37, R.40, F.41, Q.44
- Ligands: PEE.6, CDL.13
7 PLIP interactions:2 interactions with chain C, 4 interactions with chain G, 1 interactions with chain F- Hydrophobic interactions: C:W.31, G:V.37
- Hydrogen bonds: C:A.30
- Salt bridges: G:R.40, G:R.40, G:R.40, F:H.72
CDL.26: 11 residues within 4Å:- Chain M: S.29, A.30, W.31, Y.105
- Chain P: H.72
- Chain Q: V.37, R.40, F.41, Q.44
- Ligands: PEE.27, CDL.36
8 PLIP interactions:1 interactions with chain P, 3 interactions with chain M, 4 interactions with chain Q- Salt bridges: P:H.72, Q:R.40, Q:R.40, Q:R.40
- Hydrophobic interactions: M:W.31, Q:V.37
- Hydrogen bonds: M:A.30, M:Y.105
CDL.36: 16 residues within 4Å:- Chain M: A.30, N.33, K.228, G.232, L.235, M.236
- Chain N: Y.220, K.223, R.224, K.231
- Chain P: H.72, R.73
- Chain Q: I.29, L.34, R.40
- Ligands: CDL.26
13 PLIP interactions:5 interactions with chain M, 6 interactions with chain N, 1 interactions with chain Q, 1 interactions with chain P- Hydrophobic interactions: M:A.30, M:N.33, M:L.235, M:M.236, N:Y.220, N:Y.220
- Salt bridges: M:K.228, N:K.223, N:R.224, N:K.231, P:R.73
- Hydrogen bonds: N:Y.220, Q:R.40
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.14: 10 residues within 4Å:- Chain E: C.139, H.141, L.142, G.143, C.144, C.158, C.160, H.161, G.162, S.163
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.139, E:H.141, E:C.158, E:H.161
FES.32: 10 residues within 4Å:- Chain O: C.139, H.141, L.142, G.143, C.144, C.158, C.160, H.161, G.162, S.163
4 PLIP interactions:4 interactions with chain O,- Metal complexes: O:C.139, O:H.141, O:C.158, O:H.161
- 2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.16: 13 residues within 4Å:- Chain C: Y.76, L.79, L.241
- Chain D: Q.200, M.204, K.207, M.208
- Chain E: Y.49, A.50, N.53, V.54, Q.57
- Chain J: D.33
7 PLIP interactions:3 interactions with chain E, 3 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: E:V.54, C:L.241, C:L.241
- Hydrogen bonds: E:N.53, E:Q.57, C:Y.76
- Salt bridges: D:K.207
PLC.35: 14 residues within 4Å:- Chain M: Y.76, L.79, L.241
- Chain N: Q.200, M.204, K.207, M.208, I.211
- Chain O: Y.49, A.50, N.53, V.54, Q.57
- Chain T: D.33
8 PLIP interactions:4 interactions with chain O, 2 interactions with chain N, 2 interactions with chain M- Hydrophobic interactions: O:A.50, O:V.54, N:I.211, M:L.241, M:L.241
- Hydrogen bonds: O:N.53, O:Q.57
- Salt bridges: N:K.207
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron Transfer by Domain Movement in Cytochrome Bc1. Nature (1998)
- Release Date
- 2009-04-28
- Peptides
- MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I: AK
MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2: BL
Cytochrome b: CM
MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN: FP
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C: GQ
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
NB
BL
OC
CM
PD
DN
QE
EO
RF
FP
SG
GQ
TH
HR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 10 x UNL: UNKNOWN LIGAND(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x SMA: STIGMATELLIN A(Non-covalent)
- 2 x UQ: Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer(Non-covalent)
- 6 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x HEC: HEME C(Covalent)
- 4 x CDL: CARDIOLIPIN(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron Transfer by Domain Movement in Cytochrome Bc1. Nature (1998)
- Release Date
- 2009-04-28
- Peptides
- MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I: AK
MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2: BL
Cytochrome b: CM
MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN: FP
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C: GQ
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
NB
BL
OC
CM
PD
DN
QE
EO
RF
FP
SG
GQ
TH
HR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.