SMTL ID : 3h80.1

Crystal structure of the amino-terminal domain of HSP90 from Leishmania major, LmjF33.0312:M1-K213

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: N.54 Ligands: ANP.10 No protein-ligand interaction detected (PLIP) MG.9: 6 residues within 4Å: Chain A: E.161, S.162, S.177, T.178, S.181 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.161, A:S.162 MG.11: 2 residues within 4Å: Chain B: N.54 Ligands: ANP.20 No protein-ligand interaction detected (PLIP) MG.19: 6 residues within 4Å: Chain B: E.161, S.162, S.177, T.178, S.181 Ligands: EDO.17 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.161, B:S.162

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: I.99, G.100, M.101, D.105, N.109 Ligands: ANP.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.109 Water bridges: A:K.61 EDO.3: 4 residues within 4Å: Chain A: N.108, T.112, I.113 Chain B: L.14 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.112, A:T.112 Water bridges: B:L.14 EDO.4: 3 residues within 4Å: Chain A: P.77, R.78, L.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.79 Water bridges: A:S.66 EDO.5: 4 residues within 4Å: Chain A: C.80, R.82, E.95, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.95, A:E.95, A:N.97 EDO.6: 3 residues within 4Å: Chain A: K.103, A.104, N.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.108 EDO.7: 8 residues within 4Å: Chain A: S.162, Y.163, V.164, T.176, S.177, T.178, S.181 Ligands: MG.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.176, A:T.178, A:S.181 EDO.8: 7 residues within 4Å: Chain A: T.154, K.156, D.182, K.184, G.186, T.187, R.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.162, A:S.162, A:R.188 EDO.12: 6 residues within 4Å: Chain B: I.99, G.100, M.101, D.105, N.109 Ligands: ANP.20 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.109 Water bridges: B:K.61 EDO.13: 4 residues within 4Å: Chain A: L.14 Chain B: N.108, T.112, I.113 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.112, B:T.112 Water bridges: A:L.14 EDO.14: 3 residues within 4Å: Chain B: P.77, R.78, L.79 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.79 Water bridges: B:S.66 EDO.15: 4 residues within 4Å: Chain B: C.80, R.82, E.95, N.97 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.95, B:E.95, B:N.97 EDO.16: 3 residues within 4Å: Chain B: K.103, A.104, N.108 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.108 EDO.17: 8 residues within 4Å: Chain B: S.162, Y.163, V.164, T.176, S.177, T.178, S.181 Ligands: MG.19 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.176, B:T.178, B:S.181 EDO.18: 7 residues within 4Å: Chain B: T.154, K.156, D.182, K.184, G.186, T.187, R.188 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.162, B:S.162, B:R.188

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.10: 15 residues within 4Å: Chain A: E.50, N.54, A.58, D.96, M.101, N.109, L.110, G.135, G.138, V.139, G.140, F.141, T.187 Ligands: MG.1, EDO.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:E.50, A:N.54, A:D.96, A:N.109, A:G.135, A:G.138, A:G.138, A:G.140, A:F.141, A:T.187 Water bridges: A:S.53, A:A.58, A:A.58 ANP.20: 15 residues within 4Å: Chain B: E.50, N.54, A.58, D.96, M.101, N.109, L.110, G.135, G.138, V.139, G.140, F.141, T.187 Ligands: MG.11, EDO.12 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:E.50, B:E.50, B:N.54, B:D.96, B:N.109, B:G.135, B:G.138, B:G.138, B:G.140, B:F.141, B:T.187 Water bridges: B:S.53, B:N.54, B:N.54, B:D.57, B:D.57, B:A.58, B:A.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Crystal structure of the amino-terminal domain of HSP90 from Leishmania major, LmjF33.0312:M1-K213. To be Published

Release Date

2009-05-26

Peptides

Heat shock protein 83-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Heat shock protein 83-1

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